Non-Coding RNA Search

OvF6-UMC-p6mm3-014-c08

Sequence:


               
               AGGGTGGCACGGCACCTTCCCCTGGCTGGCAGAATTAATCCTCTGAGATTCCAAAGCCCA
GAAGATGCTATGAGAACTTGGTGAGCCTTGGTCCGGGCCTCCCCAACCTCCAATAGGACC
CTGCCAGAGCTGGTGAGGGAGCAGAGGACGGGGGAGCCCTGTGACCTCTGGGCTCCCTTC
ATCCCTTGCAGTGGCTGGTGACACTGGGACCAGGCCTGTGGCCAAGAGTAGGAAGAGGGC
CAGGGggagttcccattgggctgcatcggaaacaaatccgacttggaaccatgaggttga
aggttcgatctctggtctcgctcagtggCTGTGGCATAGGAACTTCCATGTGCCGCGGGT
GTGGCCCTAGAAAAACAAAAAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGTGGCACGGCACCTTCCCCTGGCTGGCAGAATTAATCCTCTGAGATTCCAAAGCCCA
GAAGATGCTATGAGAACTTGGTGAGCCTTGGTCCGGGCCTCCCCAACCTCCAATAGGACC
CTGCCAGAGCTGGTGAGGGAGCAGAGGACGGGGGAGCCCTGTGACCTCTGGGCTCCCTTC
ATCCCTTGCAGTGGCTGGTGACACTGGGACCAGGCCTGTGGCCAAGAGTAGGAAGAGGGC
CAGGGggagttcccattgggctgcatcggaaacaaatccgacttggaaccatgaggttga
aggttcgatctctggtctcgctcagtggCTGTGGCATAGGAACTTCCATGTGCCGCGGGT
GTGGCCCTAGAAAAACAAAAAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               129-246, - strand, RNAz p=0.906322

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               129-246, - strand, RNAz p=0.906322

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               94-168, + strand, RNAmicro p=0.970046

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               94-168, + strand, RNAmicro p=0.970046

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-246, gnl|bosTau2|chr12 (48350724-48350957)
               

               
               1-246, gnl|canFam2|chr5 (58658556-58658299)
               

               
               1-246, gnl|dasNov1|scaffold_14429 (1619-1859)
               

               
               1-246, gnl|echTel1|scaffold_289862 (41860-42084)
               

               
               1-246, gnl|hg17|chr1 (53449792-53450047)
               

               
               1-246, gnl|Hg17|chr1 (53450128-53449878)
               

               
               1-246, gnl|loxAfr1|scaffold_76819 (9566-9308)
               

               
               1-246, gnl|mm7|chr4 (107227062-107226825)
               

               
               1-246, gnl|Mm7|chr4 (107226749-107226976)
               

               
               1-246, gnl|oryCun1|scaffold_201480 (79348-79542)
               

               
               1-246, gnl|panTro1|chr1 (51695197-51695452)
               

               
               1-246, gnl|rheMac2|chr1 (56151610-56151867)
               

               
               1-246, gnl|rn3|chr5 (128956873-128956628)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-246, gnl|bosTau2|chr12 (48350724-48350957)
               

               
               1-246, gnl|canFam2|chr5 (58658556-58658299)
               

               
               1-246, gnl|dasNov1|scaffold_14429 (1619-1859)
               

               
               1-246, gnl|echTel1|scaffold_289862 (41860-42084)
               

               
               1-246, gnl|hg17|chr1 (53449792-53450047)
               

               
               1-246, gnl|Hg17|chr1 (53450128-53449878)
               

               
               1-246, gnl|loxAfr1|scaffold_76819 (9566-9308)
               

               
               1-246, gnl|mm7|chr4 (107227062-107226825)
               

               
               1-246, gnl|Mm7|chr4 (107226749-107226976)
               

               
               1-246, gnl|oryCun1|scaffold_201480 (79348-79542)
               

               
               1-246, gnl|panTro1|chr1 (51695197-51695452)
               

               
               1-246, gnl|rheMac2|chr1 (56151610-56151867)
               

               
               1-246, gnl|rn3|chr5 (128956873-128956628)

	1-246, gnl\|bosTau2\|chr12 (48350724-48350957)
	1-246, gnl\|canFam2\|chr5 (58658556-58658299)
	1-246, gnl\|dasNov1\|scaffold_14429 (1619-1859)
	1-246, gnl\|echTel1\|scaffold_289862 (41860-42084)
	1-246, gnl\|hg17\|chr1 (53449792-53450047)
	1-246, gnl\|Hg17\|chr1 (53450128-53449878)
	1-246, gnl\|loxAfr1\|scaffold_76819 (9566-9308)
	1-246, gnl\|mm7\|chr4 (107227062-107226825)
	1-246, gnl\|Mm7\|chr4 (107226749-107226976)
	1-246, gnl\|oryCun1\|scaffold_201480 (79348-79542)
	1-246, gnl\|panTro1\|chr1 (51695197-51695452)
	1-246, gnl\|rheMac2\|chr1 (56151610-56151867)
	1-246, gnl\|rn3\|chr5 (128956873-128956628)