Non-Coding RNA Search

OvF8-UMC-p8mm4-016-c06

Sequence:


               
               AGGTGCTGTGGAAGTTACTGGAGATCCCTTTTCCCTTACATTTGGAGAATTCTCCCATGC
CTTACGTGCAGACTCCATCTTGAAGGTGAGGCTGAAAGTAGTGGGAGGAACTGAAGTTAG
GCTGGAGCTCTGTTGTATAGTCTCCCTCTTAGGGAGGGGGAGGGTGTTGGGCAAGGGCAC
CTTTACGTTAGTGCCATATTCTGTGGATGATACTGAAATCATTGTTCCTATTTCAGTAGA
TATTTCTGAAACTGCTTTGGTTTCCTTTGTTGTCACAGGATCTGTACTTCTGACTGTAGC
AGGGCTTGGTTTCTCTTGTCCTTCTGGCTCCACCTGCTGGGCATCTTTTACTTTTCTGTT
TTTCAATGAACGTTCCTTTCCAATAGGACCAGGTTTATGTTCTTTGGCGAGCGGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGCTGTGGAAGTTACTGGAGATCCCTTTTCCCTTACATTTGGAGAATTCTCCCATGC
CTTACGTGCAGACTCCATCTTGAAGGTGAGGCTGAAAGTAGTGGGAGGAACTGAAGTTAG
GCTGGAGCTCTGTTGTATAGTCTCCCTCTTAGGGAGGGGGAGGGTGTTGGGCAAGGGCAC
CTTTACGTTAGTGCCATATTCTGTGGATGATACTGAAATCATTGTTCCTATTTCAGTAGA
TATTTCTGAAACTGCTTTGGTTTCCTTTGTTGTCACAGGATCTGTACTTCTGACTGTAGC
AGGGCTTGGTTTCTCTTGTCCTTCTGGCTCCACCTGCTGGGCATCTTTTACTTTTCTGTT
TTTCAATGAACGTTCCTTTCCAATAGGACCAGGTTTATGTTCTTTGGCGAGCGGCCGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               179-297, + strand, RNAz p=0.817978

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-297, + strand, RNAz p=0.817978

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               179-406, gnl|bosTau2|chr16 (27320290-27320063)
               

               
               179-406, gnl|canFam2|chr7 (30364784-30364522)
               

               
               179-406, gnl|dasNov1|scaffold_33731 (467-727)
               

               
               179-406, gnl|echTel1|scaffold_308379 (17268-17008)
               

               
               179-406, gnl|fr1|chrUn (207623139-207623405)
               

               
               179-406, gnl|galGal2|chr8 (4703421-4703162)
               

               
               179-406, gnl|hg17|chr1 (168267384-168267644)
               

               
               179-406, gnl|Hg17|chr1 (168267642-168267415)
               

               
               179-406, gnl|loxAfr1|scaffold_1342 (35962-35702)
               

               
               179-406, gnl|mm7|chr1 (162653858-162653598)
               

               
               179-406, gnl|Mm7|chr1 (162653598-162653825)
               

               
               179-406, gnl|monDom2|scaffold_16 (22672732-22672992)
               

               
               179-406, gnl|oryCun1|scaffold_194343 (8727-8987)
               

               
               179-406, gnl|panTro1|chr1 (150569192-150569453)
               

               
               179-406, gnl|rheMac2|chr1 (201278239-201278499)
               

               
               179-406, gnl|rn3|chr13 (78364292-78364032)
               

               
               179-406, gnl|tetNig1|chrUn_random (83562635-83562901)
               

               
               179-406, gnl|xenTro1|scaffold_74 (975567-975307)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-406, gnl|bosTau2|chr16 (27320290-27320063)
               

               
               179-406, gnl|canFam2|chr7 (30364784-30364522)
               

               
               179-406, gnl|dasNov1|scaffold_33731 (467-727)
               

               
               179-406, gnl|echTel1|scaffold_308379 (17268-17008)
               

               
               179-406, gnl|fr1|chrUn (207623139-207623405)
               

               
               179-406, gnl|galGal2|chr8 (4703421-4703162)
               

               
               179-406, gnl|hg17|chr1 (168267384-168267644)
               

               
               179-406, gnl|Hg17|chr1 (168267642-168267415)
               

               
               179-406, gnl|loxAfr1|scaffold_1342 (35962-35702)
               

               
               179-406, gnl|mm7|chr1 (162653858-162653598)
               

               
               179-406, gnl|Mm7|chr1 (162653598-162653825)
               

               
               179-406, gnl|monDom2|scaffold_16 (22672732-22672992)
               

               
               179-406, gnl|oryCun1|scaffold_194343 (8727-8987)
               

               
               179-406, gnl|panTro1|chr1 (150569192-150569453)
               

               
               179-406, gnl|rheMac2|chr1 (201278239-201278499)
               

               
               179-406, gnl|rn3|chr13 (78364292-78364032)
               

               
               179-406, gnl|tetNig1|chrUn_random (83562635-83562901)
               

               
               179-406, gnl|xenTro1|scaffold_74 (975567-975307)

	179-406, gnl\|bosTau2\|chr16 (27320290-27320063)
	179-406, gnl\|canFam2\|chr7 (30364784-30364522)
	179-406, gnl\|dasNov1\|scaffold_33731 (467-727)
	179-406, gnl\|echTel1\|scaffold_308379 (17268-17008)
	179-406, gnl\|fr1\|chrUn (207623139-207623405)
	179-406, gnl\|galGal2\|chr8 (4703421-4703162)
	179-406, gnl\|hg17\|chr1 (168267384-168267644)
	179-406, gnl\|Hg17\|chr1 (168267642-168267415)
	179-406, gnl\|loxAfr1\|scaffold_1342 (35962-35702)
	179-406, gnl\|mm7\|chr1 (162653858-162653598)
	179-406, gnl\|Mm7\|chr1 (162653598-162653825)
	179-406, gnl\|monDom2\|scaffold_16 (22672732-22672992)
	179-406, gnl\|oryCun1\|scaffold_194343 (8727-8987)
	179-406, gnl\|panTro1\|chr1 (150569192-150569453)
	179-406, gnl\|rheMac2\|chr1 (201278239-201278499)
	179-406, gnl\|rn3\|chr13 (78364292-78364032)
	179-406, gnl\|tetNig1\|chrUn_random (83562635-83562901)
	179-406, gnl\|xenTro1\|scaffold_74 (975567-975307)