Non-Coding RNA Search

Ova1-OVR010003F09

Sequence:


               
               TCCCTAGAAAATACTGGATTGCATAAATTTTGGTTGGAGAGTTTAGACATAAGACAGAAG
TTGCTTCAGCCCTAACCAGAATGGAGAGTCTCAGATTTCCAGGTTACATGCCTCTGAAAC
TTTATGCTAGAACTTTCCCACTGCCCTAGTTTGTTTATTTTTAAATCAAGCATGAACTCA
CCACTTGGTGTTTGCCAGAGTTTGGATGAATGTCAGCATCAGGCCGCTGTAATAATGGTT
TAAGATTATTTAATCCTATTACTTATACACTTCATTAGGCTGAGTGAATTGTTGGCAGTG
GTTCAGTAAACTTCCTACTTTAGAGATAGATAAAAGGTTGGAAAGAAAATGGGGAAGGAG
TCTGTTCCTTGTTTTCTTTCATATTTATCCTATATCTCCTAAAGGATGAAGGAATGATAA
TTACTCAGTACAGTGCAAAATCTGTATTAGTAGGGTCTTTTTAACTGGACTGTACCCTCA
GAACCGAAAAATGAATACATTTTCGATTAGAATTAAAGATTTGGGCAGAGGAGATAGAGG
GAGGAAAGGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTAGAAAATACTGGATTGCATAAATTTTGGTTGGAGAGTTTAGACATAAGACAGAAG
TTGCTTCAGCCCTAACCAGAATGGAGAGTCTCAGATTTCCAGGTTACATGCCTCTGAAAC
TTTATGCTAGAACTTTCCCACTGCCCTAGTTTGTTTATTTTTAAATCAAGCATGAACTCA
CCACTTGGTGTTTGCCAGAGTTTGGATGAATGTCAGCATCAGGCCGCTGTAATAATGGTT
TAAGATTATTTAATCCTATTACTTATACACTTCATTAGGCTGAGTGAATTGTTGGCAGTG
GTTCAGTAAACTTCCTACTTTAGAGATAGATAAAAGGTTGGAAAGAAAATGGGGAAGGAG
TCTGTTCCTTGTTTTCTTTCATATTTATCCTATATCTCCTAAAGGATGAAGGAATGATAA
TTACTCAGTACAGTGCAAAATCTGTATTAGTAGGGTCTTTTTAACTGGACTGTACCCTCA
GAACCGAAAAATGAATACATTTTCGATTAGAATTAAAGATTTGGGCAGAGGAGATAGAGG
GAGGAAAGGAGAGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGAGAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               270-413, + strand, RNAz p=0.999797

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-413, + strand, RNAz p=0.999797

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-572, gnl|bosTau2|chr1 (48883875-48884445)
               

               
               1-572, gnl|Hg17|chr3 (189970275-189971151)
               

               
               1-572, gnl|Mm7|chr16 (24560672-24561232)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-572, gnl|bosTau2|chr1 (48883875-48884445)
               

               
               1-572, gnl|Hg17|chr3 (189970275-189971151)
               

               
               1-572, gnl|Mm7|chr16 (24560672-24561232)

	1-572, gnl\|bosTau2\|chr1 (48883875-48884445)
	1-572, gnl\|Hg17\|chr3 (189970275-189971151)
	1-572, gnl\|Mm7\|chr16 (24560672-24561232)