Non-Coding RNA Search

Ova1-OVR010003H02

Sequence:


               
               ATTAGGGTGTGTTTGCTGGCCAAAGACAGCTGCTCTGAAAATAAGAGACTCAGCCTGGAG
ATACAGACACTAATTGGTGGCGTGAGCTGCTGGATGGGTGTACCCCCGAGAGTCTGTGTC
GCATCAAGTGGGCACATGCACCATGTCATCATGTGTCTCTAGCCAGCCCAGTAGCAACCG
GGCCGCCCCCCACGATGAGCTGGGGGGCGGAGGCGGCAGCAGCAGCGAAGGCCGGAAGCC
CTGTGAGGCCCTGCGTGGCCTCTCGTCCCCGAGCATCCGCCTGGGCATGGAGTCCTTCAT
CGTGGTCACAGAGTGTGAGCCGGCCTGTCCTGTGGATCTCAGCCTGACCAGGGACCGGCC
CCTGGAGGCAGATGGCGGCGAGGTCCCGCTTGACGCCTCTGTGGCCCAGGCCCGGCCCCT
CCTCTCCAGCCGCAAGCTCTCTCTGCAGGAGCGGACCCAGCTGGACGCAAATGGGCGTGG
TGTCTGCCCGGCTCTGCCCCACTCGCCCGTGGGCTCCCCGCAGTCCTCACCGCGGCTGCC
CCGGCGGCCCACCGTGGAGTCGCACCATGTCTCCATCACCGGGATGCAGGATTGTGTGCA
GCTGAATCAGTACACACTGAAGGATGAAATTGGAAAGGGTTCCTATGGCGTGGTCAAGTT
GGCCTACAATGAAAATGACAATACCTACTACGCAATGAAGGCGCTGTCTAAAAAGAAACT
GATCCGACAGGCGGGCTTCCCACGTCACCCCCCACCCCGAGGCACCCGGCCAGCCCCTGG
AGGCTGCATCCAGCCCAGGGGTCCCATTGAGCAGGTGTACCAGGAAATTGCCATCCTCAA
GAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAGGGTGTGTTTGCTGGCCAAAGACAGCTGCTCTGAAAATAAGAGACTCAGCCTGGAG
ATACAGACACTAATTGGTGGCGTGAGCTGCTGGATGGGTGTACCCCCGAGAGTCTGTGTC
GCATCAAGTGGGCACATGCACCATGTCATCATGTGTCTCTAGCCAGCCCAGTAGCAACCG
GGCCGCCCCCCACGATGAGCTGGGGGGCGGAGGCGGCAGCAGCAGCGAAGGCCGGAAGCC
CTGTGAGGCCCTGCGTGGCCTCTCGTCCCCGAGCATCCGCCTGGGCATGGAGTCCTTCAT
CGTGGTCACAGAGTGTGAGCCGGCCTGTCCTGTGGATCTCAGCCTGACCAGGGACCGGCC
CCTGGAGGCAGATGGCGGCGAGGTCCCGCTTGACGCCTCTGTGGCCCAGGCCCGGCCCCT
CCTCTCCAGCCGCAAGCTCTCTCTGCAGGAGCGGACCCAGCTGGACGCAAATGGGCGTGG
TGTCTGCCCGGCTCTGCCCCACTCGCCCGTGGGCTCCCCGCAGTCCTCACCGCGGCTGCC
CCGGCGGCCCACCGTGGAGTCGCACCATGTCTCCATCACCGGGATGCAGGATTGTGTGCA
GCTGAATCAGTACACACTGAAGGATGAAATTGGAAAGGGTTCCTATGGCGTGGTCAAGTT
GGCCTACAATGAAAATGACAATACCTACTACGCAATGAAGGCGCTGTCTAAAAAGAAACT
GATCCGACAGGCGGGCTTCCCACGTCACCCCCCACCCCGAGGCACCCGGCCAGCCCCTGG
AGGCTGCATCCAGCCCAGGGGTCCCATTGAGCAGGTGTACCAGGAAATTGCCATCCTCAA
GAAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8IZW1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8IZW1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               116-272, - strand, RNAz p=0.666666

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-272, - strand, RNAz p=0.666666

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               76-323, gnl|bosTau2|chr17 (28239009-28238760)
               

               
               76-323, gnl|Hg17|chr12 (120175109-120174869)
               

               
               76-323, gnl|Mm7|chr5 (121998525-121998289)
               


               
               740-845, gnl|bosTau2|chr17 (28230902-28230797)
               

               
               740-845, gnl|canFam2|chr26 (10888796-10888633)
               

               
               740-845, gnl|danRer3|chr5 (27152332-27152172)
               

               
               740-845, gnl|echTel1|scaffold_109539 (497-334)
               

               
               740-845, gnl|fr1|chrUn (15512951-15512803)
               

               
               740-845, gnl|galGal2|chr15 (5400210-5400375)
               

               
               740-845, gnl|hg17|chr12 (120164314-120164479)
               

               
               740-845, gnl|Hg17|chr12 (120164466-120164361)
               

               
               740-845, gnl|loxAfr1|scaffold_12263 (57056-56885)
               

               
               740-845, gnl|mm7|chr5 (121987910-121988069)
               

               
               740-845, gnl|Mm7|chr5 (121988058-121987953)
               

               
               740-845, gnl|monDom2|scaffold_97 (1456165-1456328)
               

               
               740-845, gnl|oryCun1|scaffold_154581 (473-303)
               

               
               740-845, gnl|panTro1|chr10 (123247385-123247550)
               

               
               740-845, gnl|rheMac2|chr11 (122336609-122336772)
               

               
               740-845, gnl|rn3|chr12 (34780227-34780068)
               

               
               740-845, gnl|tetNig1|chrUn_random (115044623-115044797)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-323, gnl|bosTau2|chr17 (28239009-28238760)
               

               
               76-323, gnl|Hg17|chr12 (120175109-120174869)
               

               
               76-323, gnl|Mm7|chr5 (121998525-121998289)
               


               
               740-845, gnl|bosTau2|chr17 (28230902-28230797)
               

               
               740-845, gnl|canFam2|chr26 (10888796-10888633)
               

               
               740-845, gnl|danRer3|chr5 (27152332-27152172)
               

               
               740-845, gnl|echTel1|scaffold_109539 (497-334)
               

               
               740-845, gnl|fr1|chrUn (15512951-15512803)
               

               
               740-845, gnl|galGal2|chr15 (5400210-5400375)
               

               
               740-845, gnl|hg17|chr12 (120164314-120164479)
               

               
               740-845, gnl|Hg17|chr12 (120164466-120164361)
               

               
               740-845, gnl|loxAfr1|scaffold_12263 (57056-56885)
               

               
               740-845, gnl|mm7|chr5 (121987910-121988069)
               

               
               740-845, gnl|Mm7|chr5 (121988058-121987953)
               

               
               740-845, gnl|monDom2|scaffold_97 (1456165-1456328)
               

               
               740-845, gnl|oryCun1|scaffold_154581 (473-303)
               

               
               740-845, gnl|panTro1|chr10 (123247385-123247550)
               

               
               740-845, gnl|rheMac2|chr11 (122336609-122336772)
               

               
               740-845, gnl|rn3|chr12 (34780227-34780068)
               

               
               740-845, gnl|tetNig1|chrUn_random (115044623-115044797)

	76-323, gnl\|bosTau2\|chr17 (28239009-28238760)
	76-323, gnl\|Hg17\|chr12 (120175109-120174869)
	76-323, gnl\|Mm7\|chr5 (121998525-121998289)

	740-845, gnl\|bosTau2\|chr17 (28230902-28230797)
	740-845, gnl\|canFam2\|chr26 (10888796-10888633)
	740-845, gnl\|danRer3\|chr5 (27152332-27152172)
	740-845, gnl\|echTel1\|scaffold_109539 (497-334)
	740-845, gnl\|fr1\|chrUn (15512951-15512803)
	740-845, gnl\|galGal2\|chr15 (5400210-5400375)
	740-845, gnl\|hg17\|chr12 (120164314-120164479)
	740-845, gnl\|Hg17\|chr12 (120164466-120164361)
	740-845, gnl\|loxAfr1\|scaffold_12263 (57056-56885)
	740-845, gnl\|mm7\|chr5 (121987910-121988069)
	740-845, gnl\|Mm7\|chr5 (121988058-121987953)
	740-845, gnl\|monDom2\|scaffold_97 (1456165-1456328)
	740-845, gnl\|oryCun1\|scaffold_154581 (473-303)
	740-845, gnl\|panTro1\|chr10 (123247385-123247550)
	740-845, gnl\|rheMac2\|chr11 (122336609-122336772)
	740-845, gnl\|rn3\|chr12 (34780227-34780068)
	740-845, gnl\|tetNig1\|chrUn_random (115044623-115044797)