Non-Coding RNA Search

Ova1-OVR010004E09

Sequence:


               
               CAACCTAGAATTTTCCTTTTTTGTTCATGTACACATAATCGCAGGGGGCAACATGTCCTT
TAATGGTAAAACTGCAGTTTTATATTCCTACATTGGCTTGGCTTTTCTAGGCTTATTGGA
GCTGAATTGCAGCAGTGTGTGTTCACAAAGGGTGCCACATCCCTTATTACCACCCTTCTC
CCACCTGATGTTAGGTGAATTTTATTGTATTAAAAAATGATACGCTGGGTTCCTTTCCTG
CCAGGAAACAAAGATCATTTTTATTAAAGTTGCTTTGAGGATGACAACGTCAGTCATCTC
TTTGAAAATTCATTTTGGAAACTAAGTTTGTTCTTCCAGAACTCTTCAAAGGAAGCTTTA
CAAATGGCAGGGGAAGGTAATAATAATAAAGTAGATGGATTTGAGCCTTTATACAGTGAA
ACTTAATTTATCTTTCAAACGCCATTGCAAACTTGCTCTTGTGCATGAAAATATACTGCC
CGCTTTCCTTGCCCATGTCTCAGATTTTCTTTGTCCGCAACGTAATACCCTCTGAAGGAT
TCTGTGTATGAGATCAGCCCCAGGGCCGCCAGGGCGAGTGCACAGGTCCACACTCAGGCC
GTCTGTGGAGAAGGCAGGGCTGGAGGCTGCCTGTGGGCTGGGAAGGCCACAAGGGACTCT
CAGCACCAGTTCTACCACCACCACCCCAAGACGGACCCAGCACACCTGCAACATTTTGAT
TTGAGCTTAATGAGTAAGAGGGATCACAAATGAAATCGTGAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACCTAGAATTTTCCTTTTTTGTTCATGTACACATAATCGCAGGGGGCAACATGTCCTT
TAATGGTAAAACTGCAGTTTTATATTCCTACATTGGCTTGGCTTTTCTAGGCTTATTGGA
GCTGAATTGCAGCAGTGTGTGTTCACAAAGGGTGCCACATCCCTTATTACCACCCTTCTC
CCACCTGATGTTAGGTGAATTTTATTGTATTAAAAAATGATACGCTGGGTTCCTTTCCTG
CCAGGAAACAAAGATCATTTTTATTAAAGTTGCTTTGAGGATGACAACGTCAGTCATCTC
TTTGAAAATTCATTTTGGAAACTAAGTTTGTTCTTCCAGAACTCTTCAAAGGAAGCTTTA
CAAATGGCAGGGGAAGGTAATAATAATAAAGTAGATGGATTTGAGCCTTTATACAGTGAA
ACTTAATTTATCTTTCAAACGCCATTGCAAACTTGCTCTTGTGCATGAAAATATACTGCC
CGCTTTCCTTGCCCATGTCTCAGATTTTCTTTGTCCGCAACGTAATACCCTCTGAAGGAT
TCTGTGTATGAGATCAGCCCCAGGGCCGCCAGGGCGAGTGCACAGGTCCACACTCAGGCC
GTCTGTGGAGAAGGCAGGGCTGGAGGCTGCCTGTGGGCTGGGAAGGCCACAAGGGACTCT
CAGCACCAGTTCTACCACCACCACCCCAAGACGGACCCAGCACACCTGCAACATTTTGAT
TTGAGCTTAATGAGTAAGAGGGATCACAAATGAAATCGTGAAATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               185-304, - strand, RNAz p=0.718906

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-304, - strand, RNAz p=0.718906

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-765, gnl|bosTau2|chr24 (28224975-28224202)
               

               
               1-765, gnl|canFam2|chr7 (77363035-77363634)
               

               
               1-765, gnl|dasNov1|scaffold_1453 (50264-50870)
               

               
               1-765, gnl|echTel1|scaffold_311992 (119571-119035)
               

               
               1-765, gnl|hg17|chr18 (8095055-8095633)
               

               
               1-765, gnl|Hg17|chr18 (8095096-8095879)
               

               
               1-765, gnl|mm7|chr17 (65208778-65208181)
               

               
               1-765, gnl|monDom2|scaffold_21 (25027461-25026891)
               

               
               1-765, gnl|oryCun1|scaffold_207224 (37003-37547)
               

               
               1-765, gnl|panTro1|chr17 (4591162-4590579)
               

               
               1-765, gnl|rheMac2|chr18 (6252862-6252275)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-765, gnl|bosTau2|chr24 (28224975-28224202)
               

               
               1-765, gnl|canFam2|chr7 (77363035-77363634)
               

               
               1-765, gnl|dasNov1|scaffold_1453 (50264-50870)
               

               
               1-765, gnl|echTel1|scaffold_311992 (119571-119035)
               

               
               1-765, gnl|hg17|chr18 (8095055-8095633)
               

               
               1-765, gnl|Hg17|chr18 (8095096-8095879)
               

               
               1-765, gnl|mm7|chr17 (65208778-65208181)
               

               
               1-765, gnl|monDom2|scaffold_21 (25027461-25026891)
               

               
               1-765, gnl|oryCun1|scaffold_207224 (37003-37547)
               

               
               1-765, gnl|panTro1|chr17 (4591162-4590579)
               

               
               1-765, gnl|rheMac2|chr18 (6252862-6252275)

	1-765, gnl\|bosTau2\|chr24 (28224975-28224202)
	1-765, gnl\|canFam2\|chr7 (77363035-77363634)
	1-765, gnl\|dasNov1\|scaffold_1453 (50264-50870)
	1-765, gnl\|echTel1\|scaffold_311992 (119571-119035)
	1-765, gnl\|hg17\|chr18 (8095055-8095633)
	1-765, gnl\|Hg17\|chr18 (8095096-8095879)
	1-765, gnl\|mm7\|chr17 (65208778-65208181)
	1-765, gnl\|monDom2\|scaffold_21 (25027461-25026891)
	1-765, gnl\|oryCun1\|scaffold_207224 (37003-37547)
	1-765, gnl\|panTro1\|chr17 (4591162-4590579)
	1-765, gnl\|rheMac2\|chr18 (6252862-6252275)