Non-Coding RNA Search

Ova1-OVR010004G10

Sequence:


               
               TTTCTTCATCATCCACTTTGTCAGGCTGAGGCCATTCCTCATTTTTGCACAGTGAGCCTA
CGGGCAGGGCAGATGATAGCTTTTCCACAGGGAATTAAGGGCATAAAAGCGAGAAAAGCC
ACTGGGCTTTGCCAGGAAGCAGGAGGAGGGGATCTTCTTCCGCTTTATGTTGCGCTGTCT
CTCTAATGCTTGAAATATTTGGCTGCTCCGATGCGAGCACCCGCTGATGGAGGCTCGTAA
TTCTTCTTTGGCACATGTCCCATTTGGGGCAGTAATTCACAATTTCTTCACTGCCTTCTA
TTAAGCAATTAAAGGAAGGCAGACATTATTCTATGGATATATATAATCAGATGATTTTTA
ATTACTTAGTGGGGTTGGAAGGGGAGAGAATGGTGAGGGGAAGAGCTTCACAGTTTTTTT
CCCTCTACTGCCTTAATTTGGATTTTTTTGGTGAGGGTGGGGTTGAGGGGGTGGAAGCTT
CAAAAGCATCCTTGAATGTCGGCTCTGCACCTGGGGCCCTGGGCACTAGTGACATATTAG
TGAGCAAAAAGGACACAGACCCCTGTCCAGGAGTTCCCATTGTGGCTTAGTGTGTTGGGA
ACCCTCAGGCTACATCTCAGAGTCCTATTTCCCAGGGAGATTTCAGTCCATCTGATGCTC
CCAGCCCCTCCTCACACCTCACCGTTCCCTCTGCCTCTAGCATCCTCCACCATCTCATAT
CCGCTTCTGGCAGCTTCCTTGGGAGGGTTCTCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTTCATCATCCACTTTGTCAGGCTGAGGCCATTCCTCATTTTTGCACAGTGAGCCTA
CGGGCAGGGCAGATGATAGCTTTTCCACAGGGAATTAAGGGCATAAAAGCGAGAAAAGCC
ACTGGGCTTTGCCAGGAAGCAGGAGGAGGGGATCTTCTTCCGCTTTATGTTGCGCTGTCT
CTCTAATGCTTGAAATATTTGGCTGCTCCGATGCGAGCACCCGCTGATGGAGGCTCGTAA
TTCTTCTTTGGCACATGTCCCATTTGGGGCAGTAATTCACAATTTCTTCACTGCCTTCTA
TTAAGCAATTAAAGGAAGGCAGACATTATTCTATGGATATATATAATCAGATGATTTTTA
ATTACTTAGTGGGGTTGGAAGGGGAGAGAATGGTGAGGGGAAGAGCTTCACAGTTTTTTT
CCCTCTACTGCCTTAATTTGGATTTTTTTGGTGAGGGTGGGGTTGAGGGGGTGGAAGCTT
CAAAAGCATCCTTGAATGTCGGCTCTGCACCTGGGGCCCTGGGCACTAGTGACATATTAG
TGAGCAAAAAGGACACAGACCCCTGTCCAGGAGTTCCCATTGTGGCTTAGTGTGTTGGGA
ACCCTCAGGCTACATCTCAGAGTCCTATTTCCCAGGGAGATTTCAGTCCATCTGATGCTC
CCAGCCCCTCCTCACACCTCACCGTTCCCTCTGCCTCTAGCATCCTCCACCATCTCATAT
CCGCTTCTGGCAGCTTCCTTGGGAGGGTTCTCTTTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               201-392, - strand, RNAz p=0.971737
               

               
               211-439, - strand, RNAz p=0.979043

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-392, - strand, RNAz p=0.971737
               

               
               211-439, - strand, RNAz p=0.979043

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               2-439, gnl|bosTau2|chr2 (19418329-19417890)
               

               
               2-439, gnl|canFam2|chr10 (36787481-36786863)
               

               
               2-439, gnl|dasNov1|scaffold_1404 (79987-79376)
               

               
               2-439, gnl|hg17|chr12 (103528942-103529587)
               

               
               2-439, gnl|Hg17|chr12 (103529226-103529668)
               

               
               2-439, gnl|loxAfr1|scaffold_22626 (3349-4012)
               

               
               2-439, gnl|mm7|chr10 (82655351-82655870)
               

               
               2-439, gnl|oryCun1|scaffold_214300 (93901-94477)
               

               
               2-439, gnl|panTro1|chr10 (106011523-106012167)
               

               
               2-439, gnl|rheMac2|chr11 (105746580-105747219)
               

               
               2-439, gnl|rn3|chr7 (22835298-22834678)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-439, gnl|bosTau2|chr2 (19418329-19417890)
               

               
               2-439, gnl|canFam2|chr10 (36787481-36786863)
               

               
               2-439, gnl|dasNov1|scaffold_1404 (79987-79376)
               

               
               2-439, gnl|hg17|chr12 (103528942-103529587)
               

               
               2-439, gnl|Hg17|chr12 (103529226-103529668)
               

               
               2-439, gnl|loxAfr1|scaffold_22626 (3349-4012)
               

               
               2-439, gnl|mm7|chr10 (82655351-82655870)
               

               
               2-439, gnl|oryCun1|scaffold_214300 (93901-94477)
               

               
               2-439, gnl|panTro1|chr10 (106011523-106012167)
               

               
               2-439, gnl|rheMac2|chr11 (105746580-105747219)
               

               
               2-439, gnl|rn3|chr7 (22835298-22834678)

	201-392, - strand, RNAz p=0.971737
	211-439, - strand, RNAz p=0.979043

	2-439, gnl\|bosTau2\|chr2 (19418329-19417890)
	2-439, gnl\|canFam2\|chr10 (36787481-36786863)
	2-439, gnl\|dasNov1\|scaffold_1404 (79987-79376)
	2-439, gnl\|hg17\|chr12 (103528942-103529587)
	2-439, gnl\|Hg17\|chr12 (103529226-103529668)
	2-439, gnl\|loxAfr1\|scaffold_22626 (3349-4012)
	2-439, gnl\|mm7\|chr10 (82655351-82655870)
	2-439, gnl\|oryCun1\|scaffold_214300 (93901-94477)
	2-439, gnl\|panTro1\|chr10 (106011523-106012167)
	2-439, gnl\|rheMac2\|chr11 (105746580-105747219)
	2-439, gnl\|rn3\|chr7 (22835298-22834678)