Non-Coding RNA Search

Ova1-OVR010013A11

Sequence:


               
               CTCTGAAAATGCAAAGAAACGGAGTGACGAAACTTATGGATGGAGCTTTCTGGGGGCTGA
GCAACATGGAAATTTTGCAGCTGGACCATAACAACCTAACAGAGATTACCAAAGGCTGGC
TTTATGGCTTGCTGATGCTGCAGGAACTTCATCTCAGCCAGAATGCCATCAACAGGATCA
GCCCTGATGCCTGGGAGTTCTGCCAGAAACTCAGTGAGCTGGACCTAACTTTCAATCACT
TATCAAGGTTGGATGATTCAAGCTTCCTGGGCCTGAGCTTGCTAAATACACTGCACATTG
GGAATAACAAAGTCAGCTACATTGCTGATTGTGCCTTCCGGGGGCTTTCCAGTTTAAAGA
CTTTGGATCTGAAGAACAATGAAATTTCCTGGACCATTGAGGACATGAATGGTGCCTTCT
CTGGGCTTGACAAACTGAGACGGCTAATACTCCAGGGAAACCGGATTCGATCCATTACCA
AAAAAGCCTTCACTGGTTTGGATGCATTAGAACATCTGTGAGTAGCAGGAACTTAGTTAC
CTTAAACATCATCTGAGATGGTTATCTATTTATGGGTCATGAAAAAATAATACAAACTGG
AATGTAATTTTGTCCTCACTACCATAGACAGATACACACATCTGTCTATCTTCTGTCTAC
CTACCTACTTATTTGTTGATATCTTTATGGAGGTATATACAGGTACATACTTCTTTTGTA
TTTAAGGACATTGCTATACATAATTATTGGGTTTTCTTTTTTTTTTTTTTAAGTGCCACA
GGTGTGGCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGAAAATGCAAAGAAACGGAGTGACGAAACTTATGGATGGAGCTTTCTGGGGGCTGA
GCAACATGGAAATTTTGCAGCTGGACCATAACAACCTAACAGAGATTACCAAAGGCTGGC
TTTATGGCTTGCTGATGCTGCAGGAACTTCATCTCAGCCAGAATGCCATCAACAGGATCA
GCCCTGATGCCTGGGAGTTCTGCCAGAAACTCAGTGAGCTGGACCTAACTTTCAATCACT
TATCAAGGTTGGATGATTCAAGCTTCCTGGGCCTGAGCTTGCTAAATACACTGCACATTG
GGAATAACAAAGTCAGCTACATTGCTGATTGTGCCTTCCGGGGGCTTTCCAGTTTAAAGA
CTTTGGATCTGAAGAACAATGAAATTTCCTGGACCATTGAGGACATGAATGGTGCCTTCT
CTGGGCTTGACAAACTGAGACGGCTAATACTCCAGGGAAACCGGATTCGATCCATTACCA
AAAAAGCCTTCACTGGTTTGGATGCATTAGAACATCTGTGAGTAGCAGGAACTTAGTTAC
CTTAAACATCATCTGAGATGGTTATCTATTTATGGGTCATGAAAAAATAATACAAACTGG
AATGTAATTTTGTCCTCACTACCATAGACAGATACACACATCTGTCTATCTTCTGTCTAC
CTACCTACTTATTTGTTGATATCTTTATGGAGGTATATACAGGTACATACTTCTTTTGTA
TTTAAGGACATTGCTATACATAATTATTGGGTTTTCTTTTTTTTTTTTTTAAGTGCCACA
GGTGTGGCATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               116-235, + strand, RNAz p=0.987919

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-235, + strand, RNAz p=0.987919

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY358288, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY358288, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               77-280, gnl|bosTau2|chrX (14964309-14964512)
               

               
               77-280, gnl|Hg17|chr12 (57568521-57568314)
               

               
               77-280, gnl|Mm7|chr10 (125489438-125489641)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-280, gnl|bosTau2|chrX (14964309-14964512)
               

               
               77-280, gnl|Hg17|chr12 (57568521-57568314)
               

               
               77-280, gnl|Mm7|chr10 (125489438-125489641)

	77-280, gnl\|bosTau2\|chrX (14964309-14964512)
	77-280, gnl\|Hg17\|chr12 (57568521-57568314)
	77-280, gnl\|Mm7\|chr10 (125489438-125489641)