Non-Coding RNA Search

Ova1-OVR010025B07

Sequence:


               
               TGAGTTGGGGGAGATGATTGAACTTTCATCTGACTTTTCTTACCTAGAAAATGAAGCTGA
TGATGGAAACCATATAACTTGCTCAAGGAGTTGTTATAAAGATGAACTAGATTGCTGTAG
TTAAAGTTCTTGTAAGTTCTTATACGTGCTCAATAAATAATAACTATGGTTTAAGCTCAG
ATTAACATCAAGCAATTGGAACACCTCTATTTTGTGGTTCCAAATGGTCAGATTTCCCTA
AGGGCTGCCTTTGCCATGATATTTACCACTTGTTTGGGGATTGGTTCTCTGGTAGGAAGA
CTGTAATGTTCTCCTGGACTTCTTACCTAAGATATCTTTCCTGTTTCCCACCCAAGGTCC
ACCTGGTCCCTGATGGAAGGTGATGATGATGAGGCTAAGTATTGTCAGGAGGAATCTAGA
TGGCTGGATGCCAGGAGGACTCCCTAAAGAGCATTACTGGGGGGGGGGGGATATTCTGGG
ATCCTGCACCTATCTCTAAGTCTGGTCAGTGGCCTGGAGTTGATTATATACATGGAGACT
GACTCATGATAAACAAACTCATAAGAGACTAATGTATATAATTCTGAATGTCTGTGTGCT
CCTGTATGGTGAGGGATTACCCTTTCCAGTGACCAGAATGCCAGGGAAATGGGGATTTTT
TTATTCAGAGGTAGAAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTTGGGGGAGATGATTGAACTTTCATCTGACTTTTCTTACCTAGAAAATGAAGCTGA
TGATGGAAACCATATAACTTGCTCAAGGAGTTGTTATAAAGATGAACTAGATTGCTGTAG
TTAAAGTTCTTGTAAGTTCTTATACGTGCTCAATAAATAATAACTATGGTTTAAGCTCAG
ATTAACATCAAGCAATTGGAACACCTCTATTTTGTGGTTCCAAATGGTCAGATTTCCCTA
AGGGCTGCCTTTGCCATGATATTTACCACTTGTTTGGGGATTGGTTCTCTGGTAGGAAGA
CTGTAATGTTCTCCTGGACTTCTTACCTAAGATATCTTTCCTGTTTCCCACCCAAGGTCC
ACCTGGTCCCTGATGGAAGGTGATGATGATGAGGCTAAGTATTGTCAGGAGGAATCTAGA
TGGCTGGATGCCAGGAGGACTCCCTAAAGAGCATTACTGGGGGGGGGGGGATATTCTGGG
ATCCTGCACCTATCTCTAAGTCTGGTCAGTGGCCTGGAGTTGATTATATACATGGAGACT
GACTCATGATAAACAAACTCATAAGAGACTAATGTATATAATTCTGAATGTCTGTGTGCT
CCTGTATGGTGAGGGATTACCCTTTCCAGTGACCAGAATGCCAGGGAAATGGGGATTTTT
TTATTCAGAGGTAGAAACTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               113-230, - strand, RNAz p=0.998157
               

               
               384-615, + strand, RNAz p=0.998113

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-230, - strand, RNAz p=0.998157
               

               
               384-615, + strand, RNAz p=0.998113

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               33-658, gnl|bosTau2|chr15 (26670949-26670337)
               

               
               33-658, gnl|Hg17|chr11 (10664359-10663197)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-658, gnl|bosTau2|chr15 (26670949-26670337)
               

               
               33-658, gnl|Hg17|chr11 (10664359-10663197)

	113-230, - strand, RNAz p=0.998157
	384-615, + strand, RNAz p=0.998113

	33-658, gnl\|bosTau2\|chr15 (26670949-26670337)
	33-658, gnl\|Hg17\|chr11 (10664359-10663197)