Non-Coding RNA Search

Ova1-OVR010025F05

Sequence:


               
               TGGAATTTTCTGAGAATTTGTTTTTTTCAAATCACTTCATTTATTTCATGAAAACTGTTT
ACATGGATCAGTGGTCCTCAAATTCAAATGCCTAAAAGTCAGGCAGGTAATGTAAAAGGG
CCAGCTGGCCAGCTATGAGGCAATAAAGAGCAGTAGGGACTATGGCAACCTGGAGGAAAT
AGCCAGTCTCAAGGAAGCAATTTCTGCCTAGCTACAGGCTCTTGTTTAAGTGCCAGGATG
TGGGTTCCCTGATGTCAAATCTTGAGCTTTTTTAAGACAGGAAGAATTCCAGAATTTTAT
GTGAAATTTCCCAATTTTTAAACCATGTGTGTGGGCCAAACCACATCTGTGGACCACATC
TGGCCAGAAGACTGCCAGTTTGCAGTCTTGACCTAACTGCCCTCAATTCTCCACTTCTCT
TGACCTGGTGAATAGGCCATTTAAATGGCATGGATACATAGTGGATTCTTCTGGGTAGTG
TCTTCACAATATACACCAATTTTAGGACTGACCTTTAGCTTCCCAGGGTCAGAATTTTTG
TTTTCTCAGAACCCATTAGATTGGCTGCTGTTACTGATCCTCAAACTGAAGAATTTATTG
CAAAAACAAGAATTCTAATTAAGTAATTTATAGTGAGAAATATCTTGCCAGGTATCGGTT
TAATTCTCGCCTTGTTATTTATCCACCTGGAAGCAAACTCCTAAGCAGAAGCTGCTTTCG
TGCATATGGAAACTGAGGGACTTGAAAGAAGTACCCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAATTTTCTGAGAATTTGTTTTTTTCAAATCACTTCATTTATTTCATGAAAACTGTTT
ACATGGATCAGTGGTCCTCAAATTCAAATGCCTAAAAGTCAGGCAGGTAATGTAAAAGGG
CCAGCTGGCCAGCTATGAGGCAATAAAGAGCAGTAGGGACTATGGCAACCTGGAGGAAAT
AGCCAGTCTCAAGGAAGCAATTTCTGCCTAGCTACAGGCTCTTGTTTAAGTGCCAGGATG
TGGGTTCCCTGATGTCAAATCTTGAGCTTTTTTAAGACAGGAAGAATTCCAGAATTTTAT
GTGAAATTTCCCAATTTTTAAACCATGTGTGTGGGCCAAACCACATCTGTGGACCACATC
TGGCCAGAAGACTGCCAGTTTGCAGTCTTGACCTAACTGCCCTCAATTCTCCACTTCTCT
TGACCTGGTGAATAGGCCATTTAAATGGCATGGATACATAGTGGATTCTTCTGGGTAGTG
TCTTCACAATATACACCAATTTTAGGACTGACCTTTAGCTTCCCAGGGTCAGAATTTTTG
TTTTCTCAGAACCCATTAGATTGGCTGCTGTTACTGATCCTCAAACTGAAGAATTTATTG
CAAAAACAAGAATTCTAATTAAGTAATTTATAGTGAGAAATATCTTGCCAGGTATCGGTT
TAATTCTCGCCTTGTTATTTATCCACCTGGAAGCAAACTCCTAAGCAGAAGCTGCTTTCG
TGCATATGGAAACTGAGGGACTTGAAAGAAGTACCCACC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               309-462, - strand, RNAz p=0.8234

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               309-462, - strand, RNAz p=0.8234

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-654, gnl|bosTau2|chr20 (11874098-11874766)
               

               
               4-654, gnl|Hg17|chr5 (58435356-58434680)
               

               
               4-654, gnl|Mm7|chr13 (106984971-106985631)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-654, gnl|bosTau2|chr20 (11874098-11874766)
               

               
               4-654, gnl|Hg17|chr5 (58435356-58434680)
               

               
               4-654, gnl|Mm7|chr13 (106984971-106985631)

	4-654, gnl\|bosTau2\|chr20 (11874098-11874766)
	4-654, gnl\|Hg17\|chr5 (58435356-58434680)
	4-654, gnl\|Mm7\|chr13 (106984971-106985631)