Non-Coding RNA Search

Ova1-OVR010029H04

Sequence:


               
               CATAAAATACAATTTTCCTAAACATTCAGTTTCCTCTGTTCGCATAAAGACTAATAAATC
TCATTTAGCCATACTGCATAGGTTTGATGATCAAAACAGGCGTTTTACCTTCACCATGGC
AGGAGGGGGCTTTTTAAACAGACCAAGCACAAAAAAGTTTTCCTCCTAATTTTCCCATTC
TGACATGAGTGAATAATAACCATCCTTCCACCTGGAACCAGATCTCATTCTAAAGTGTAT
TAAAATCTTTTTTGAAAGTGTATAAATGCTCCAGTTCGAAGAGACCTTAGGGAAAGTGCG
ATATAGTGTAAAGTCTGAAAAATGAGAAATCCACCCTTGTTTTGCATCGGGGAATCAGAC
CAGACAATCATTTATTGTGGAAGAAAAAAAGGTATGCTCTACTGGGCTGTTCCAAAAGCT
GTAATTTTATTTTGAAGTTCTCAAGTTTTGTTCTCCTGGTTTATGGTTTTTATGCTAAAA
TTATGGCTTTGTAATGGGTTGTGAGGCATACTTTATGCACTATCATAATTATAAGCTATT
ACAGTTCATTCTTTGTATCAGGATGGTTTTATGGACATTTAAATGACGTTTCTGACAATG
AAGCTAAAGCTCTAATAGTACTACATTATGGCTATACCTGGTGGTATGCAGTCTCTCAGT
TTTTCTATTATAAACGATTGAGAGGAGGAGGGTGGGATTTAAAAACCTCAGCTGCTTGCC
TGCCTCACCCTGTGCTAGGGCGCGACACGTAGATTTATCAGTCCATTTGTATTTAAATAA
CTTATATGCTTTTCGCCTCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATAAAATACAATTTTCCTAAACATTCAGTTTCCTCTGTTCGCATAAAGACTAATAAATC
TCATTTAGCCATACTGCATAGGTTTGATGATCAAAACAGGCGTTTTACCTTCACCATGGC
AGGAGGGGGCTTTTTAAACAGACCAAGCACAAAAAAGTTTTCCTCCTAATTTTCCCATTC
TGACATGAGTGAATAATAACCATCCTTCCACCTGGAACCAGATCTCATTCTAAAGTGTAT
TAAAATCTTTTTTGAAAGTGTATAAATGCTCCAGTTCGAAGAGACCTTAGGGAAAGTGCG
ATATAGTGTAAAGTCTGAAAAATGAGAAATCCACCCTTGTTTTGCATCGGGGAATCAGAC
CAGACAATCATTTATTGTGGAAGAAAAAAAGGTATGCTCTACTGGGCTGTTCCAAAAGCT
GTAATTTTATTTTGAAGTTCTCAAGTTTTGTTCTCCTGGTTTATGGTTTTTATGCTAAAA
TTATGGCTTTGTAATGGGTTGTGAGGCATACTTTATGCACTATCATAATTATAAGCTATT
ACAGTTCATTCTTTGTATCAGGATGGTTTTATGGACATTTAAATGACGTTTCTGACAATG
AAGCTAAAGCTCTAATAGTACTACATTATGGCTATACCTGGTGGTATGCAGTCTCTCAGT
TTTTCTATTATAAACGATTGAGAGGAGGAGGGTGGGATTTAAAAACCTCAGCTGCTTGCC
TGCCTCACCCTGTGCTAGGGCGCGACACGTAGATTTATCAGTCCATTTGTATTTAAATAA
CTTATATGCTTTTCGCCTCACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               392-511, + strand, RNAz p=0.98701

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               392-511, + strand, RNAz p=0.98701

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-801, gnl|bosTau2|chr1 (4513477-4512693)
               

               
               1-801, gnl|Hg17|chr21 (30020407-30019624)
               

               
               1-801, gnl|Mm7|chr16 (88146464-88145668)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-801, gnl|bosTau2|chr1 (4513477-4512693)
               

               
               1-801, gnl|Hg17|chr21 (30020407-30019624)
               

               
               1-801, gnl|Mm7|chr16 (88146464-88145668)

	1-801, gnl\|bosTau2\|chr1 (4513477-4512693)
	1-801, gnl\|Hg17\|chr21 (30020407-30019624)
	1-801, gnl\|Mm7\|chr16 (88146464-88145668)