Non-Coding RNA Search

Ova1-OVR010036A12

Sequence:


               
               ATAACAGGGGCAATAGAAATGGCCTCAAGTTGCTCTTGGGGGTAAGAGAGGTTTAAAAAA
CCCTGTTAGACTTTCCTTTCTGCCACCTGATAATACCTTGAACCTAAGTGTATCTGGGAC
AAGACCTAGATGTAGACTTCAGCTCAGAGAAGAAGGCTTGTCTGGGAAATAATACGGGCT
CAACCAACCATTAGAATTTTGGAAAGCCATCTGATATTCAGATTACTAGATTTCTTTATA
GAGAAGTAACTCTAATCTAAAAACTGTTTGTGCTGCTTTGCTTATTTAAGGAAAGCCTTA
ATGACAGTCTTTGGTTTAGACTTGACCTCATAGCAAAGGTAAGGATGTAAGATATGGAGA
TTGGATCCCGTGTGGCAATGGTATTAAAAACGTTTTCATCGTGGCATAGAGACCTTATCT
GTGATGACTTCTAGCCTGACCCTCATTTTCAGAAGCTTAATGTCCATTAGAGCACAGAAA
ATGAAGAAAAAAATATGAATATGCTATTCTTTTTTTTTTTTCTTCttctttttaggaacg
cactggccgcatatggaagtccccaggctaggggtcaaatcagagctgcagctgccagcc
tatgctacagccacagcaaagcaggatctgagcctcatctgcaacctatacgacagctca
cagcaacaccagatccttaacctactgagcaagatcaagaattgaaccagcatcttcatg
gatgctagtcagattcggaagccaccgaaccacaacgggaactccAGATCTGCTATTCCT
TTTTGAAAAAACAAAATAAGACTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAACAGGGGCAATAGAAATGGCCTCAAGTTGCTCTTGGGGGTAAGAGAGGTTTAAAAAA
CCCTGTTAGACTTTCCTTTCTGCCACCTGATAATACCTTGAACCTAAGTGTATCTGGGAC
AAGACCTAGATGTAGACTTCAGCTCAGAGAAGAAGGCTTGTCTGGGAAATAATACGGGCT
CAACCAACCATTAGAATTTTGGAAAGCCATCTGATATTCAGATTACTAGATTTCTTTATA
GAGAAGTAACTCTAATCTAAAAACTGTTTGTGCTGCTTTGCTTATTTAAGGAAAGCCTTA
ATGACAGTCTTTGGTTTAGACTTGACCTCATAGCAAAGGTAAGGATGTAAGATATGGAGA
TTGGATCCCGTGTGGCAATGGTATTAAAAACGTTTTCATCGTGGCATAGAGACCTTATCT
GTGATGACTTCTAGCCTGACCCTCATTTTCAGAAGCTTAATGTCCATTAGAGCACAGAAA
ATGAAGAAAAAAATATGAATATGCTATTCTTTTTTTTTTTTCTTCttctttttaggaacg
cactggccgcatatggaagtccccaggctaggggtcaaatcagagctgcagctgccagcc
tatgctacagccacagcaaagcaggatctgagcctcatctgcaacctatacgacagctca
cagcaacaccagatccttaacctactgagcaagatcaagaattgaaccagcatcttcatg
gatgctagtcagattcggaagccaccgaaccacaacgggaactccAGATCTGCTATTCCT
TTTTGAAAAAACAAAATAAGACTCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               140-256, + strand, RNAz p=0.615682
               

               
               237-352, - strand, RNAz p=0.981426

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               140-256, + strand, RNAz p=0.615682
               

               
               237-352, - strand, RNAz p=0.981426

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-519, gnl|bosTau2|chr3 (1216920-1216420)
               

               
               1-519, gnl|canFam2|chr16 (39567040-39567384)
               

               
               1-519, gnl|galGal2|chr4 (65028255-65027890)
               

               
               1-519, gnl|hg17|chr8 (13069835-13070187)
               

               
               1-519, gnl|Hg17|chr8 (13070362-13069859)
               

               
               1-519, gnl|loxAfr1|scaffold_108 (87353-86988)
               

               
               1-519, gnl|mm7|chr8 (35411350-35411835)
               

               
               1-519, gnl|oryCun1|scaffold_200168 (250606-250281)
               

               
               1-519, gnl|panTro1|chr7 (13667566-13667918)
               

               
               1-519, gnl|rheMac2|chr8 (12987421-12987790)
               

               
               1-519, gnl|rn3|chr16 (59286326-59285889)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-519, gnl|bosTau2|chr3 (1216920-1216420)
               

               
               1-519, gnl|canFam2|chr16 (39567040-39567384)
               

               
               1-519, gnl|galGal2|chr4 (65028255-65027890)
               

               
               1-519, gnl|hg17|chr8 (13069835-13070187)
               

               
               1-519, gnl|Hg17|chr8 (13070362-13069859)
               

               
               1-519, gnl|loxAfr1|scaffold_108 (87353-86988)
               

               
               1-519, gnl|mm7|chr8 (35411350-35411835)
               

               
               1-519, gnl|oryCun1|scaffold_200168 (250606-250281)
               

               
               1-519, gnl|panTro1|chr7 (13667566-13667918)
               

               
               1-519, gnl|rheMac2|chr8 (12987421-12987790)
               

               
               1-519, gnl|rn3|chr16 (59286326-59285889)

	140-256, + strand, RNAz p=0.615682
	237-352, - strand, RNAz p=0.981426

	1-519, gnl\|bosTau2\|chr3 (1216920-1216420)
	1-519, gnl\|canFam2\|chr16 (39567040-39567384)
	1-519, gnl\|galGal2\|chr4 (65028255-65027890)
	1-519, gnl\|hg17\|chr8 (13069835-13070187)
	1-519, gnl\|Hg17\|chr8 (13070362-13069859)
	1-519, gnl\|loxAfr1\|scaffold_108 (87353-86988)
	1-519, gnl\|mm7\|chr8 (35411350-35411835)
	1-519, gnl\|oryCun1\|scaffold_200168 (250606-250281)
	1-519, gnl\|panTro1\|chr7 (13667566-13667918)
	1-519, gnl\|rheMac2\|chr8 (12987421-12987790)
	1-519, gnl\|rn3\|chr16 (59286326-59285889)