Non-Coding RNA Search

Ova1-OVR010043B08

Sequence:


               
               CTCGTTCTACTGTTACGAACAATGCTGTAGACAGGTATTTGCTAGATTCTCGTGTTTGTT
CCTCATCTTCCCTTGACATACTCCCTGCTCATCTTGTTACAGACCACTCTAAATTCGGAA
CCTCAGAACTCCAAGAAATTAAATCTTCTCTCTAAAAGAGGGACTTCTCCAGAGAAAGCC
CCTCTTGGGTGTTCCATTTAGTAAAATACTACTTAGATGCAATCAAGGACACCCTGAAGG
TGGAAAGCAGTGACTCCCGCATCCAAAGCGTCCGGTCTCCCCCAGGATTAGTCACTTGGC
TGTCGCACTATGCAGCTAGTAATTCAGAGATAATCGTGTTACCAAGATGCCATTTAATCT
GTATTTGGCATATCACAAGTTTTCATCTTCATTAATAGAGCCATCAAAGTTTCATCGGGC
CTGACTTGTATTGGACACACTAGTGATTCACCCGGGTCGGGGGGCGGGTGCAGTTTGCCT
GGAGCGACTCTGTTTGCCAGATGGCAGCTGTTAATCTGCATCAGGGGTGAGAGGGGGGCT
AAGTTTGCCTGGCCCCCAGCCAGTGGGGCTCTCCTGCACCTCTGATTACACAGCGCTGCG
GGCCAGGCTAGGGATCCTGGGCCCTTGTGGCAGGGCTAGCTCTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGTTCTACTGTTACGAACAATGCTGTAGACAGGTATTTGCTAGATTCTCGTGTTTGTT
CCTCATCTTCCCTTGACATACTCCCTGCTCATCTTGTTACAGACCACTCTAAATTCGGAA
CCTCAGAACTCCAAGAAATTAAATCTTCTCTCTAAAAGAGGGACTTCTCCAGAGAAAGCC
CCTCTTGGGTGTTCCATTTAGTAAAATACTACTTAGATGCAATCAAGGACACCCTGAAGG
TGGAAAGCAGTGACTCCCGCATCCAAAGCGTCCGGTCTCCCCCAGGATTAGTCACTTGGC
TGTCGCACTATGCAGCTAGTAATTCAGAGATAATCGTGTTACCAAGATGCCATTTAATCT
GTATTTGGCATATCACAAGTTTTCATCTTCATTAATAGAGCCATCAAAGTTTCATCGGGC
CTGACTTGTATTGGACACACTAGTGATTCACCCGGGTCGGGGGGCGGGTGCAGTTTGCCT
GGAGCGACTCTGTTTGCCAGATGGCAGCTGTTAATCTGCATCAGGGGTGAGAGGGGGGCT
AAGTTTGCCTGGCCCCCAGCCAGTGGGGCTCTCCTGCACCTCTGATTACACAGCGCTGCG
GGCCAGGCTAGGGATCCTGGGCCCTTGTGGCAGGGCTAGCTCTCCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               91-316, - strand, RNAz p=0.997261
               

               
               477-645, + strand, RNAz p=0.996597

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               91-316, - strand, RNAz p=0.997261
               

               
               477-645, + strand, RNAz p=0.996597

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               522-614, + strand, RNAmicro p=0.998215

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               522-614, + strand, RNAmicro p=0.998215

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               13-645, gnl|bosTau2|chr21 (5646538-5645895)
               

               
               13-645, gnl|Hg17|chr15 (94578945-94578329)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-645, gnl|bosTau2|chr21 (5646538-5645895)
               

               
               13-645, gnl|Hg17|chr15 (94578945-94578329)

	91-316, - strand, RNAz p=0.997261
	477-645, + strand, RNAz p=0.996597

	13-645, gnl\|bosTau2\|chr21 (5646538-5645895)
	13-645, gnl\|Hg17\|chr15 (94578945-94578329)