Non-Coding RNA Search

Ova1-OVR010046E04

Sequence:


               
               AGAATGTCTTGTTTGTGGCTTGTCAGCAATTGCTTGAGACAAGCTCCCATGTGTGAAAGC
TACTTGGCATGAATGCCTGGGCCGTACCAAGTGTCACCGCAGCAAGAGGGGGAGTCAGAA
GAAAAACAGATCAGACCAGAGCAGACAATAGGCCCCTAAAGTGTTCCCCCTAAGTTGCTT
TGATGTTGTCCTAGTGTCTTGATACCAGGAGGCCAGGGATTGCAGGAAAAGGGTCTTTTT
TGTCTTCACTCACTTTCCCCCCTCAGTTTCTGAAATGATTCTCCAGAATTTCTCCTCATA
AAAAAGGTAAGAGCCCTAACAATTCCTTCTTCTGTGGCAGGCTGGTTCGCCCGTGCCTGG
AAGTGGGGGTCTCATTCCTGCGCTGCTCAGGACGAGCGCTGGGGTCCTGCGATTGGGCTC
CTGCCTTGCCCCTGGAAGTCTCTCCAGGCGCTCAGGGCTTGGGGATGGCCCCTCTTTCTA
GGGAACCCCAGGAACACGATCTGTGCCTCTGGGTTGGTGCGGGAGAAGGGGAGGATGGAG
AGGGATGGGAGGAGGGTGTGAAGGTGGAGGGTGCGAGAGGGGAAAAAAGCAAGAGAGAGA
GAGAGGGAGCAGCCTGAAAGAGAGGGAGAGAAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATGTCTTGTTTGTGGCTTGTCAGCAATTGCTTGAGACAAGCTCCCATGTGTGAAAGC
TACTTGGCATGAATGCCTGGGCCGTACCAAGTGTCACCGCAGCAAGAGGGGGAGTCAGAA
GAAAAACAGATCAGACCAGAGCAGACAATAGGCCCCTAAAGTGTTCCCCCTAAGTTGCTT
TGATGTTGTCCTAGTGTCTTGATACCAGGAGGCCAGGGATTGCAGGAAAAGGGTCTTTTT
TGTCTTCACTCACTTTCCCCCCTCAGTTTCTGAAATGATTCTCCAGAATTTCTCCTCATA
AAAAAGGTAAGAGCCCTAACAATTCCTTCTTCTGTGGCAGGCTGGTTCGCCCGTGCCTGG
AAGTGGGGGTCTCATTCCTGCGCTGCTCAGGACGAGCGCTGGGGTCCTGCGATTGGGCTC
CTGCCTTGCCCCTGGAAGTCTCTCCAGGCGCTCAGGGCTTGGGGATGGCCCCTCTTTCTA
GGGAACCCCAGGAACACGATCTGTGCCTCTGGGTTGGTGCGGGAGAAGGGGAGGATGGAG
AGGGATGGGAGGAGGGTGTGAAGGTGGAGGGTGCGAGAGGGGAAAAAAGCAAGAGAGAGA
GAGAGGGAGCAGCCTGAAAGAGAGGGAGAGAAGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.881113
               

               
               360-557, + strand, RNAz p=0.864982

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.881113
               

               
               360-557, + strand, RNAz p=0.864982

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-635, gnl|bosTau2|chr3 (19622494-19621872)
               

               
               1-635, gnl|Hg17|chr1 (144237955-144238585)
               

               
               1-635, gnl|Mm7|chr3 (97170043-97169419)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-635, gnl|bosTau2|chr3 (19622494-19621872)
               

               
               1-635, gnl|Hg17|chr1 (144237955-144238585)
               

               
               1-635, gnl|Mm7|chr3 (97170043-97169419)

	1-119, - strand, RNAz p=0.881113
	360-557, + strand, RNAz p=0.864982

	1-635, gnl\|bosTau2\|chr3 (19622494-19621872)
	1-635, gnl\|Hg17\|chr1 (144237955-144238585)
	1-635, gnl\|Mm7\|chr3 (97170043-97169419)