Non-Coding RNA Search

Ova1-OVR010046H07

Sequence:


               
               CGTTTAACTGGTAAATGTAAGCTCTGTATACTAGATTCTATAACATTATCAGTGGAATTG
GAAGTACACTGCAATACGACTCCGAGCTTTGAAATGGACAGCGAGTGTTGCAAATAAATC
TTTGGAAGTTCATTATTATCCAACAAAATTATTGCTCACTGTATCTGAAATAAGAAATCT
ATGGCTTTGACATTTAATCAGAGCATGAAACACATTTATTGAATCTCATATTTGAGATTA
TTTTTTCCGTAGCACCCCAATTAAAGCCTGTGGGTTTAAAAAATTCCTTTCAGACCACCT
AAAATTCACAGTGCTTGTTATACATGCAGATTCTTTTTATTCTTTACTTCACGTTCAGTT
GCCTTTTCTTGAACATGCTTATTCTGAGTTCTTAATGAACAGAAATGGCTTTAATATAAG
TACACAAAGACCAAGCCAAGAATTTTTGTATGTGTGTAACAAAGGACCTAGAAGGATGAA
ACTGCCTATGTTTCCCTGTGACTGATCAGTTGAATATAAAGTATTTACAACAGAATATGA
AAGGAAGTTTCTATCTGCTATAGGGCCGGTGTTGTAACATAAGGCAATTTTATATGCCTA
CATAATTTGAATTATTAGACTTTAAAGATGCTCCCTAGTCAGAGTCCAAGAAAGAAAGGA
CGGAAGAGAAGCAGAGAAGGAAAAGAGAGGGTGAGAGGATGAAGGGAAATCGAGGAGGAA
TCTGACTCTCTCCTCCTCTTGTTTTTCTCTTTCTAGTGAGAAAAAACTGCCTATTCATGA
GCTGCTGCAAATCACATACATTGCAGCTTAACTGTCATCTCTGATTTAATATAAACTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTTAACTGGTAAATGTAAGCTCTGTATACTAGATTCTATAACATTATCAGTGGAATTG
GAAGTACACTGCAATACGACTCCGAGCTTTGAAATGGACAGCGAGTGTTGCAAATAAATC
TTTGGAAGTTCATTATTATCCAACAAAATTATTGCTCACTGTATCTGAAATAAGAAATCT
ATGGCTTTGACATTTAATCAGAGCATGAAACACATTTATTGAATCTCATATTTGAGATTA
TTTTTTCCGTAGCACCCCAATTAAAGCCTGTGGGTTTAAAAAATTCCTTTCAGACCACCT
AAAATTCACAGTGCTTGTTATACATGCAGATTCTTTTTATTCTTTACTTCACGTTCAGTT
GCCTTTTCTTGAACATGCTTATTCTGAGTTCTTAATGAACAGAAATGGCTTTAATATAAG
TACACAAAGACCAAGCCAAGAATTTTTGTATGTGTGTAACAAAGGACCTAGAAGGATGAA
ACTGCCTATGTTTCCCTGTGACTGATCAGTTGAATATAAAGTATTTACAACAGAATATGA
AAGGAAGTTTCTATCTGCTATAGGGCCGGTGTTGTAACATAAGGCAATTTTATATGCCTA
CATAATTTGAATTATTAGACTTTAAAGATGCTCCCTAGTCAGAGTCCAAGAAAGAAAGGA
CGGAAGAGAAGCAGAGAAGGAAAAGAGAGGGTGAGAGGATGAAGGGAAATCGAGGAGGAA
TCTGACTCTCTCCTCCTCTTGTTTTTCTCTTTCTAGTGAGAAAAAACTGCCTATTCATGA
GCTGCTGCAAATCACATACATTGCAGCTTAACTGTCATCTCTGATTTAATATAAACTTTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               126-244, - strand, RNAz p=0.565845
               

               
               662-766, + strand, RNAz p=0.988928

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-244, - strand, RNAz p=0.565845
               

               
               662-766, + strand, RNAz p=0.988928

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               713-798, + strand, RNAmicro p=0.995023

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               713-798, + strand, RNAmicro p=0.995023

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               662-766, BP144653 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP144653.1|), blast E-value=0, identity=100% 
               

               
               662-766, BW969421 full-length enriched swine cDNA library, adult periphral 
(dbj|BW969421.1|), blast E-value=0, identity=100%

Similar Transcript(s): 2 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               662-766, BP144653 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP144653.1|), blast E-value=0, identity=100% 
               

               
               662-766, BW969421 full-length enriched swine cDNA library, adult periphral 
(dbj|BW969421.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-840, gnl|bosTau2|chr4 (29781598-29782437)
               

               
               20-840, gnl|Hg17|chr7 (110341867-110341036)
               

               
               20-840, gnl|Mm7|chr12 (39302242-39303024)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-840, gnl|bosTau2|chr4 (29781598-29782437)
               

               
               20-840, gnl|Hg17|chr7 (110341867-110341036)
               

               
               20-840, gnl|Mm7|chr12 (39302242-39303024)

	126-244, - strand, RNAz p=0.565845
	662-766, + strand, RNAz p=0.988928

	662-766, BP144653 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BP144653.1\|), blast E-value=0, identity=100%
	662-766, BW969421 full-length enriched swine cDNA library, adult periphral (dbj\|BW969421.1\|), blast E-value=0, identity=100%

	20-840, gnl\|bosTau2\|chr4 (29781598-29782437)
	20-840, gnl\|Hg17\|chr7 (110341867-110341036)
	20-840, gnl\|Mm7\|chr12 (39302242-39303024)