Non-Coding RNA Search

Ova1-OVR010047E09

Sequence:


               
               CTTTGCAGAGCTTGTGGTCCAGTTGGGGAGATGGACATTAATCTCATAAATATATAAATA
AAAATTGAATCTGTGTTCGGTTGGAGTCTAGGAGGACGTAAGAGAGTATTAAAGGGAAAT
GTTCTAGTCTGAAGGGAAATTTCCTTGAAGAGGCAATGTTTGGTCTGAGGCAAAGGGCAT
AGCGTGTGCAAAAGTCCTGTGGCATGCTGGAGGAACCAAGGAAGGCTGCTGTAACTGGAG
CACAAGAGAGAAAGGGAAAGTGTGGCTCACGATAGAGTCAGAGAGGTCAGGAGGGACCAG
AACACACAGGAACTTGATGTACATTTTAAGGATGTGTACTTTCTCCTAAGAGCAGTGAGC
AGCTGTGGAAGGGTTTAAGTCAGGAACTGACTTAATCCAATTCATGTCTAAAAATTTCTC
CCTGGCTACAAGGAGCTTTAGCAATAGGATGAAATGAATGAGTTCTGAGTAGGCTTTTTC
TGGATAAAATTTAGAAAATAGAAATGAGATATGTGCATGTCCATGAAGGACAAGGCATTA
GCTGGACAAGGTTGTGACAAAAGAGCTTTCCCTTGAACTGCTTCCCTCCTTCTGCTCATT
CTCTGTCCCATTTGGTAATTTAAAGAAGCCGACAGCCCGCCCCCACCTTGGAAGTTTTTG
ATACTGTGGAGAGATCTATTTTCCTCCCAAGCAGAGTTGGGAGCAGTTTGCCTCTCCCTG
CTGTCTCTGTGGCTCCCTACAACTGTCCTTTAAATGTCTGAAGAGGTGGCCTGAGGACTA
TGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGCAGAGCTTGTGGTCCAGTTGGGGAGATGGACATTAATCTCATAAATATATAAATA
AAAATTGAATCTGTGTTCGGTTGGAGTCTAGGAGGACGTAAGAGAGTATTAAAGGGAAAT
GTTCTAGTCTGAAGGGAAATTTCCTTGAAGAGGCAATGTTTGGTCTGAGGCAAAGGGCAT
AGCGTGTGCAAAAGTCCTGTGGCATGCTGGAGGAACCAAGGAAGGCTGCTGTAACTGGAG
CACAAGAGAGAAAGGGAAAGTGTGGCTCACGATAGAGTCAGAGAGGTCAGGAGGGACCAG
AACACACAGGAACTTGATGTACATTTTAAGGATGTGTACTTTCTCCTAAGAGCAGTGAGC
AGCTGTGGAAGGGTTTAAGTCAGGAACTGACTTAATCCAATTCATGTCTAAAAATTTCTC
CCTGGCTACAAGGAGCTTTAGCAATAGGATGAAATGAATGAGTTCTGAGTAGGCTTTTTC
TGGATAAAATTTAGAAAATAGAAATGAGATATGTGCATGTCCATGAAGGACAAGGCATTA
GCTGGACAAGGTTGTGACAAAAGAGCTTTCCCTTGAACTGCTTCCCTCCTTCTGCTCATT
CTCTGTCCCATTTGGTAATTTAAAGAAGCCGACAGCCCGCCCCCACCTTGGAAGTTTTTG
ATACTGTGGAGAGATCTATTTTCCTCCCAAGCAGAGTTGGGAGCAGTTTGCCTCTCCCTG
CTGTCTCTGTGGCTCCCTACAACTGTCCTTTAAATGTCTGAAGAGGTGGCCTGAGGACTA
TGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               598-756, - strand, RNAz p=0.882242

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               598-756, - strand, RNAz p=0.882242

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               660-786, - strand, RNAmicro p=0.915281

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               660-786, - strand, RNAmicro p=0.915281

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-783, gnl|bosTau2|chr10 (59396572-59395761)
               

               
               1-783, gnl|Hg17|chr14 (72405790-72405042)
               

               
               1-783, gnl|Mm7|chr12 (81462206-81461458)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-783, gnl|bosTau2|chr10 (59396572-59395761)
               

               
               1-783, gnl|Hg17|chr14 (72405790-72405042)
               

               
               1-783, gnl|Mm7|chr12 (81462206-81461458)

	1-783, gnl\|bosTau2\|chr10 (59396572-59395761)
	1-783, gnl\|Hg17\|chr14 (72405790-72405042)
	1-783, gnl\|Mm7\|chr12 (81462206-81461458)