Non-Coding RNA Search

Ova1-OVRM10001B07

Sequence:


               
               CTTGGGGCCCTGGATTGGCCGGGACCTGCCCTGGGACGGGGGCCGAGGGGCTGGCTTAGG
CCCGGGGGGACTTAAGGAGACCTTCGCCCAGCCCATGCTGTGCCCCGCCCCTTTCCCTTG
CCCGCTCTGGAGTGGGGAGCCTAAGGATGCCCTAGGGACTTCCTCCTGGGATCTCAGCCG
AGGGCCCAGCAGTTGGCTTGAATGCCCTACTCTGGCATCTTTAGGAAGTGTCAGAGCTGG
GCCATGGCACGGCCTCATTGCCAGCCCGCAAGAATCTCTATGAGTGCTAAGCTAGGTTAC
CCTTTTGCCACTGGCTACAGCACCTTTTATATTTCTGGCGCTGTGTCAGGCACTGGGGGT
TTTTAAGATATTGTTCCAGTTTTCAGGGTCAAGTTTGGATGCCAGAAAAAAACAAATGAG
TGATCCTGCGATATATGTATCAGCCATATATGTATGAACTGTCTAAAGGACAGTTTGCTG
GGAAAGCTGAAGAAAGAAAGTGACGTCTGAATCATACTTTTTGAAGAGGATACGGTGGAG
AAGAGCTTTTCCGACAGGAGGAACAGTTGCTATGCTGTGAAGGAATACTGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGGGCCCTGGATTGGCCGGGACCTGCCCTGGGACGGGGGCCGAGGGGCTGGCTTAGG
CCCGGGGGGACTTAAGGAGACCTTCGCCCAGCCCATGCTGTGCCCCGCCCCTTTCCCTTG
CCCGCTCTGGAGTGGGGAGCCTAAGGATGCCCTAGGGACTTCCTCCTGGGATCTCAGCCG
AGGGCCCAGCAGTTGGCTTGAATGCCCTACTCTGGCATCTTTAGGAAGTGTCAGAGCTGG
GCCATGGCACGGCCTCATTGCCAGCCCGCAAGAATCTCTATGAGTGCTAAGCTAGGTTAC
CCTTTTGCCACTGGCTACAGCACCTTTTATATTTCTGGCGCTGTGTCAGGCACTGGGGGT
TTTTAAGATATTGTTCCAGTTTTCAGGGTCAAGTTTGGATGCCAGAAAAAAACAAATGAG
TGATCCTGCGATATATGTATCAGCCATATATGTATGAACTGTCTAAAGGACAGTTTGCTG
GGAAAGCTGAAGAAAGAAAGTGACGTCTGAATCATACTTTTTGAAGAGGATACGGTGGAG
AAGAGCTTTTCCGACAGGAGGAACAGTTGCTATGCTGTGAAGGAATACTGAGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               121-236, + strand, RNAz p=0.678637

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-236, + strand, RNAz p=0.678637

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               23-127, - strand, RNAmicro p=0.995897
               

               
               206-246, + strand, RNAmicro p=0.954038

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               23-127, - strand, RNAmicro p=0.995897
               

               
               206-246, + strand, RNAmicro p=0.954038

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-582, gnl|bosTau2|chr11 (75868790-75868225)
               

               
               1-582, gnl|Hg17|chr9 (122773208-122772574)
               

               
               1-582, gnl|Mm7|chr2 (37450305-37449680)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-582, gnl|bosTau2|chr11 (75868790-75868225)
               

               
               1-582, gnl|Hg17|chr9 (122773208-122772574)
               

               
               1-582, gnl|Mm7|chr2 (37450305-37449680)

	23-127, - strand, RNAmicro p=0.995897
	206-246, + strand, RNAmicro p=0.954038

	1-582, gnl\|bosTau2\|chr11 (75868790-75868225)
	1-582, gnl\|Hg17\|chr9 (122773208-122772574)
	1-582, gnl\|Mm7\|chr2 (37450305-37449680)