Non-Coding RNA Search

Ova1-OVRM10001C03

Sequence:


               
               CTTTGCTGTTAGATGTTTTAAACCCACATGTTACTTAAGAGCTATGCAGTGTTGGTCAAA
TTTAATTTAATTTGACCAGCTTGATTTCTCTGAGTCTGTTTCCTCATCAGAAAAATGAGA
ATATTAAGACCCATCTCATGGTGTTAATgttgccagatgaaatataggactcacagttaa
atttcagataaacaacaaataccttttggtataagtatgtcccaaatattgcacagggca
tacttatgataaaaaattattagttgtttattttaaattcaaattacctgggcaacttgt
actttcgtgtgttatatctgacaacccACAGTATTATGGCAAATTCACTCATGTAAAATG
CTCAGTATGATCCTTGACGTCGTGAGGTGCCAGTCGCAAATAATCATTTTTGTGATCACT
ATCATCATAAAATTCAGAAGCCTGAAAGTACACATGTCCCAGGATAATGATTTCTTACTC
AGTCCTTGAACCATAGAGTGGTGTCCCAGTTAACTTGCACCAATTAAGGTGGTTTCTCAT
TATGCTGCCCTGACGCAGGAGCTGTTCACCTTCATCTTGTATGGTATGGTTTCACTTTCC
TTCTGATTGTTTCAGGAGTTTATCTTGTGTATCTATTTCACTTGACCTTATCTTTTAGCC
ACTCATAATTAATGAATATTATTTCCCTTTATAGGCCAATAATAAAAGTATTAAATGGCA
CCAGGCTTGGAACTGGTATTTAAGGGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGCTGTTAGATGTTTTAAACCCACATGTTACTTAAGAGCTATGCAGTGTTGGTCAAA
TTTAATTTAATTTGACCAGCTTGATTTCTCTGAGTCTGTTTCCTCATCAGAAAAATGAGA
ATATTAAGACCCATCTCATGGTGTTAATgttgccagatgaaatataggactcacagttaa
atttcagataaacaacaaataccttttggtataagtatgtcccaaatattgcacagggca
tacttatgataaaaaattattagttgtttattttaaattcaaattacctgggcaacttgt
actttcgtgtgttatatctgacaacccACAGTATTATGGCAAATTCACTCATGTAAAATG
CTCAGTATGATCCTTGACGTCGTGAGGTGCCAGTCGCAAATAATCATTTTTGTGATCACT
ATCATCATAAAATTCAGAAGCCTGAAAGTACACATGTCCCAGGATAATGATTTCTTACTC
AGTCCTTGAACCATAGAGTGGTGTCCCAGTTAACTTGCACCAATTAAGGTGGTTTCTCAT
TATGCTGCCCTGACGCAGGAGCTGTTCACCTTCATCTTGTATGGTATGGTTTCACTTTCC
TTCTGATTGTTTCAGGAGTTTATCTTGTGTATCTATTTCACTTGACCTTATCTTTTAGCC
ACTCATAATTAATGAATATTATTTCCCTTTATAGGCCAATAATAAAAGTATTAAATGGCA
CCAGGCTTGGAACTGGTATTTAAGGGTCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               38-154, + strand, RNAz p=0.787967
               

               
               369-466, - strand, RNAz p=0.989813

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-154, + strand, RNAz p=0.787967
               

               
               369-466, - strand, RNAz p=0.989813

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-749, gnl|bosTau2|chr3 (11760131-11759386)
               

               
               1-749, gnl|Hg17|chr12 (99806001-99806837)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-749, gnl|bosTau2|chr3 (11760131-11759386)
               

               
               1-749, gnl|Hg17|chr12 (99806001-99806837)

	38-154, + strand, RNAz p=0.787967
	369-466, - strand, RNAz p=0.989813

	1-749, gnl\|bosTau2\|chr3 (11760131-11759386)
	1-749, gnl\|Hg17\|chr12 (99806001-99806837)