Non-Coding RNA Search

Ova1-OVRM10003A06

Sequence:


               
               CAGCAGGACTCGGGCCCTGTACCCTCGTGTGGAGGGTTCAGCGGAGCCGGCCACTTCTCC
GTTAGTTAAGCAAGACTCTTCCAGCACCTCTGCCAGTTTCCTGGGGCATATAACCAGGGA
GAAGCAGAAGCACAGGAAGATAAACTTGCCCCCAGTGCCTCCTACCCTGCTGCCTTACCA
GAGGAGGGCAGATGCCTTGGGTCTGCTGCTCATCCCAGTCCCAGGTAAGAAGGAGACGCA
GTTAGTCACCAGATGGCCCACTGACCTCTGTTTGGGAATAAGGTATGGTTCTGGCCCTTT
ACCCTTGAGTCATGCAGAAAGGAGAGAGCCCTGCCTGGCAGGGCTCTGGAAGCGGGATTG
TTCCAGCCACTGGAGAGTGGTCCAGTCAGAACCTGCTTGGACCGCCTGGTCCTTCAGTGC
CCGATTCCCAGTGCCCCCCTAGATGCCTGCAGGGGGAGCAGGGCTCAGGGCTCCTAAAGG
ACTGTTGTTCACCTCCGTCTTTGGCCACGTTTTTTAATCTTTAGGGATTTTAATTCTCAT
TTTTTTGAGAATGGTAATTGAGCCAGTTCTGGGGGGAAAAAAGACAGGAAACAAGATAAG
TTGAAAAATGGATTTTCTAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAGGACTCGGGCCCTGTACCCTCGTGTGGAGGGTTCAGCGGAGCCGGCCACTTCTCC
GTTAGTTAAGCAAGACTCTTCCAGCACCTCTGCCAGTTTCCTGGGGCATATAACCAGGGA
GAAGCAGAAGCACAGGAAGATAAACTTGCCCCCAGTGCCTCCTACCCTGCTGCCTTACCA
GAGGAGGGCAGATGCCTTGGGTCTGCTGCTCATCCCAGTCCCAGGTAAGAAGGAGACGCA
GTTAGTCACCAGATGGCCCACTGACCTCTGTTTGGGAATAAGGTATGGTTCTGGCCCTTT
ACCCTTGAGTCATGCAGAAAGGAGAGAGCCCTGCCTGGCAGGGCTCTGGAAGCGGGATTG
TTCCAGCCACTGGAGAGTGGTCCAGTCAGAACCTGCTTGGACCGCCTGGTCCTTCAGTGC
CCGATTCCCAGTGCCCCCCTAGATGCCTGCAGGGGGAGCAGGGCTCAGGGCTCCTAAAGG
ACTGTTGTTCACCTCCGTCTTTGGCCACGTTTTTTAATCTTTAGGGATTTTAATTCTCAT
TTTTTTGAGAATGGTAATTGAGCCAGTTCTGGGGGGAAAAAAGACAGGAAACAAGATAAG
TTGAAAAATGGATTTTCTAAAAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               88-202, - strand, RNAz p=0.971999
               

               
               283-398, - strand, RNAz p=0.954584

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-202, - strand, RNAz p=0.971999
               

               
               283-398, - strand, RNAz p=0.954584

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               16-407, gnl|bosTau2|chr11 (61755692-61755298)
               

               
               16-407, gnl|Hg17|chr2 (20816518-20816118)
               


               
               444-621, gnl|bosTau2|chr11 (61755293-61755113)
               

               
               444-621, gnl|canFam2|chr17 (18633003-18633191)
               

               
               444-621, gnl|dasNov1|scaffold_58895 (8729-8908)
               

               
               444-621, gnl|echTel1|scaffold_318504 (57271-57456)
               

               
               444-621, gnl|hg17|chr2 (20815829-20816019)
               

               
               444-621, gnl|Hg17|chr2 (20816080-20815899)
               

               
               444-621, gnl|loxAfr1|scaffold_10852 (34943-35110)
               

               
               444-621, gnl|oryCun1|scaffold_111916 (507-675)
               

               
               444-621, gnl|panTro1|chr12 (21641245-21641435)
               

               
               444-621, gnl|rheMac2|chr13 (20619809-20619999)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-407, gnl|bosTau2|chr11 (61755692-61755298)
               

               
               16-407, gnl|Hg17|chr2 (20816518-20816118)
               


               
               444-621, gnl|bosTau2|chr11 (61755293-61755113)
               

               
               444-621, gnl|canFam2|chr17 (18633003-18633191)
               

               
               444-621, gnl|dasNov1|scaffold_58895 (8729-8908)
               

               
               444-621, gnl|echTel1|scaffold_318504 (57271-57456)
               

               
               444-621, gnl|hg17|chr2 (20815829-20816019)
               

               
               444-621, gnl|Hg17|chr2 (20816080-20815899)
               

               
               444-621, gnl|loxAfr1|scaffold_10852 (34943-35110)
               

               
               444-621, gnl|oryCun1|scaffold_111916 (507-675)
               

               
               444-621, gnl|panTro1|chr12 (21641245-21641435)
               

               
               444-621, gnl|rheMac2|chr13 (20619809-20619999)

	88-202, - strand, RNAz p=0.971999
	283-398, - strand, RNAz p=0.954584

	16-407, gnl\|bosTau2\|chr11 (61755692-61755298)
	16-407, gnl\|Hg17\|chr2 (20816518-20816118)

	444-621, gnl\|bosTau2\|chr11 (61755293-61755113)
	444-621, gnl\|canFam2\|chr17 (18633003-18633191)
	444-621, gnl\|dasNov1\|scaffold_58895 (8729-8908)
	444-621, gnl\|echTel1\|scaffold_318504 (57271-57456)
	444-621, gnl\|hg17\|chr2 (20815829-20816019)
	444-621, gnl\|Hg17\|chr2 (20816080-20815899)
	444-621, gnl\|loxAfr1\|scaffold_10852 (34943-35110)
	444-621, gnl\|oryCun1\|scaffold_111916 (507-675)
	444-621, gnl\|panTro1\|chr12 (21641245-21641435)
	444-621, gnl\|rheMac2\|chr13 (20619809-20619999)