Non-Coding RNA Search

Ova1-OVRM10005H05

Sequence:


               
               AACAGAAGCTGAAAAGTTTCTTAAGGTCTAGCCTCTAAATTCATATGTTAAAATTCCCAA
CTCCAAATGCAactgtgtttggagatagggtctttttggaggtaataaagttaaatgagg
tcataagggtggggctctaatccagtggggctgctggccttataagaagaAGGAGAGACA
CATCTTTCTGTCTTTGAGCATGCACTCAGAGGAAGGGCCATGTGAGGACACAGTTAAAAG
ATGGCCATCTACAAACCAGGAAAAGAGCTCTTATTTGGAACCAGATCAGCTAGCATATTG
ATCTTGGCCTTACAGCCTCTGTGAGGCATATATTTCTGTTGTTTAAGCTGCCCAATTTGT
GGTATTAGTCTGCAGCTCAAGCATACTAACACCTGGTGTCACTCCACCTGCATTTTCTGG
CTGTGCTCAAGGACCAGTAATATAGAGCATAGCCTCTTTGGAGAGAGCTGTGAATTATGG
GTAATGCTAGAAAATACTGTTAAATAGGATGGGGACCACGGTATGGAGAGACTTGATGAA
AGTAGATATTCAGAAGTTATTGAAAGTTTTGGAGCAGAAGAATATTAGGATAAAAACAGC
ATTTTAGGAAGATTGGTTTCTTTTCTCTGCTTAGTTTTTCATACTATTAGGCTCTAGTTG
TGGGGATATATTAGCAGCTTGATTTTATTATCTAGGCATAAATTCTATAAATCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGAAGCTGAAAAGTTTCTTAAGGTCTAGCCTCTAAATTCATATGTTAAAATTCCCAA
CTCCAAATGCAactgtgtttggagatagggtctttttggaggtaataaagttaaatgagg
tcataagggtggggctctaatccagtggggctgctggccttataagaagaAGGAGAGACA
CATCTTTCTGTCTTTGAGCATGCACTCAGAGGAAGGGCCATGTGAGGACACAGTTAAAAG
ATGGCCATCTACAAACCAGGAAAAGAGCTCTTATTTGGAACCAGATCAGCTAGCATATTG
ATCTTGGCCTTACAGCCTCTGTGAGGCATATATTTCTGTTGTTTAAGCTGCCCAATTTGT
GGTATTAGTCTGCAGCTCAAGCATACTAACACCTGGTGTCACTCCACCTGCATTTTCTGG
CTGTGCTCAAGGACCAGTAATATAGAGCATAGCCTCTTTGGAGAGAGCTGTGAATTATGG
GTAATGCTAGAAAATACTGTTAAATAGGATGGGGACCACGGTATGGAGAGACTTGATGAA
AGTAGATATTCAGAAGTTATTGAAAGTTTTGGAGCAGAAGAATATTAGGATAAAAACAGC
ATTTTAGGAAGATTGGTTTCTTTTCTCTGCTTAGTTTTTCATACTATTAGGCTCTAGTTG
TGGGGATATATTAGCAGCTTGATTTTATTATCTAGGCATAAATTCTATAAATCTCT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               105-260, - strand, RNAz p=0.999927
               

               
               156-268, - strand, RNAz p=0.811136
               

               
               178-272, + strand, RNAz p=0.512531

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               105-260, - strand, RNAz p=0.999927
               

               
               156-268, - strand, RNAz p=0.811136
               

               
               178-272, + strand, RNAz p=0.512531

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               26-369, gnl|bosTau2|chr28 (12397902-12398254)
               

               
               26-369, gnl|canFam2|chr4 (16698900-16699204)
               

               
               26-369, gnl|hg17|chr10 (62866734-62867047)
               

               
               26-369, gnl|Hg17|chr10 (62867073-62866768)
               

               
               26-369, gnl|mm7|chr10 (68342960-68342650)
               

               
               26-369, gnl|oryCun1|scaffold_211822 (55945-56275)
               

               
               26-369, gnl|panTro1|chr8 (63719469-63719782)
               

               
               26-369, gnl|rheMac2|chr9 (75841111-75840797)
               

               
               26-369, gnl|rn3|chr20 (20678565-20678864)
               


               
               37-366, gnl|bosTau2|chr14 (5505579-5505913)
               

               
               37-366, gnl|Hg17|chrX (48104782-48105114)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-369, gnl|bosTau2|chr28 (12397902-12398254)
               

               
               26-369, gnl|canFam2|chr4 (16698900-16699204)
               

               
               26-369, gnl|hg17|chr10 (62866734-62867047)
               

               
               26-369, gnl|Hg17|chr10 (62867073-62866768)
               

               
               26-369, gnl|mm7|chr10 (68342960-68342650)
               

               
               26-369, gnl|oryCun1|scaffold_211822 (55945-56275)
               

               
               26-369, gnl|panTro1|chr8 (63719469-63719782)
               

               
               26-369, gnl|rheMac2|chr9 (75841111-75840797)
               

               
               26-369, gnl|rn3|chr20 (20678565-20678864)
               


               
               37-366, gnl|bosTau2|chr14 (5505579-5505913)
               

               
               37-366, gnl|Hg17|chrX (48104782-48105114)

	105-260, - strand, RNAz p=0.999927
	156-268, - strand, RNAz p=0.811136
	178-272, + strand, RNAz p=0.512531

	26-369, gnl\|bosTau2\|chr28 (12397902-12398254)
	26-369, gnl\|canFam2\|chr4 (16698900-16699204)
	26-369, gnl\|hg17\|chr10 (62866734-62867047)
	26-369, gnl\|Hg17\|chr10 (62867073-62866768)
	26-369, gnl\|mm7\|chr10 (68342960-68342650)
	26-369, gnl\|oryCun1\|scaffold_211822 (55945-56275)
	26-369, gnl\|panTro1\|chr8 (63719469-63719782)
	26-369, gnl\|rheMac2\|chr9 (75841111-75840797)
	26-369, gnl\|rn3\|chr20 (20678565-20678864)

	37-366, gnl\|bosTau2\|chr14 (5505579-5505913)
	37-366, gnl\|Hg17\|chrX (48104782-48105114)