Non-Coding RNA Search

Ova1-OVRM10010D01

Sequence:


               
               CAGAGGCTTGAGGAAGCCGGTGTGGGAGACACGCGACAGGAACCCGGCGCCAAGCGCGGT
GGCAGGACGAATTCGAGCGAGAGACTCTCCGGCCCGGAAACGTTGCCCCCCATCCCCGAA
CCCCAAGACTTACCCCGGCGTCCCAGCCCAGCTAGCATCTGAGCGGAGGAAGGGTGCCAG
GATGCCGGTGGCCCAAGAGCCTTTCTCGGACCGAGGAGCCCGGTCTCAACACCTTCGGTG
GGATCTGGCCTGGATCACTGTTGCAGCCTGAGCCGCAGTTTTTGTTTTCCCTGGAAATGG
ACGTTCCCAGGGCGCCCTCTGGTGGATTCTGGAGCTAACTGCGGGTACATTCCAAGGGAT
GGCCGTGGTTCTCACATCCAGCGCCAGACCCTACACCTCCNACGAGACCCTGCATGAACA
TTACAACTACGTCGGCAAACTTGAGGGCCGGCTGAAGGATGCCCCCGAGGGCAGCACGCT
CACCACCGTGCTGTTCTTGATCATCTGCAGCTTCATTGTCCTGGAGAACCTGATGGTTTT
GATTGCCATCTGGAAAAACAATAAATTTCACAACCGCATGTACTTTTTCATTGGCAACCT
GGCTCTCTGCGACCTGCTGGCTGGCATAGCTTAACAGGTCAACATCCTGATGTCCGGCAA
GAAGACGCTGAGCCTGTCTCTGACGGTGTGGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGGCTTGAGGAAGCCGGTGTGGGAGACACGCGACAGGAACCCGGCGCCAAGCGCGGT
GGCAGGACGAATTCGAGCGAGAGACTCTCCGGCCCGGAAACGTTGCCCCCCATCCCCGAA
CCCCAAGACTTACCCCGGCGTCCCAGCCCAGCTAGCATCTGAGCGGAGGAAGGGTGCCAG
GATGCCGGTGGCCCAAGAGCCTTTCTCGGACCGAGGAGCCCGGTCTCAACACCTTCGGTG
GGATCTGGCCTGGATCACTGTTGCAGCCTGAGCCGCAGTTTTTGTTTTCCCTGGAAATGG
ACGTTCCCAGGGCGCCCTCTGGTGGATTCTGGAGCTAACTGCGGGTACATTCCAAGGGAT
GGCCGTGGTTCTCACATCCAGCGCCAGACCCTACACCTCCNACGAGACCCTGCATGAACA
TTACAACTACGTCGGCAAACTTGAGGGCCGGCTGAAGGATGCCCCCGAGGGCAGCACGCT
CACCACCGTGCTGTTCTTGATCATCTGCAGCTTCATTGTCCTGGAGAACCTGATGGTTTT
GATTGCCATCTGGAAAAACAATAAATTTCACAACCGCATGTACTTTTTCATTGGCAACCT
GGCTCTCTGCGACCTGCTGGCTGGCATAGCTTAACAGGTCAACATCCTGATGTCCGGCAA
GAAGACGCTGAGCCTGTCTCTGACGGTGTGGTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               448-564, + strand, RNAz p=0.797136

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               448-564, + strand, RNAz p=0.797136

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               214-694, gnl|bosTau2|chr8 (48820230-48820710)
               

               
               214-694, gnl|Hg17|chr9 (88845521-88846005)
               

               
               214-694, gnl|Mm7|chr13 (50451549-50452032)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               214-694, gnl|bosTau2|chr8 (48820230-48820710)
               

               
               214-694, gnl|Hg17|chr9 (88845521-88846005)
               

               
               214-694, gnl|Mm7|chr13 (50451549-50452032)

	214-694, gnl\|bosTau2\|chr8 (48820230-48820710)
	214-694, gnl\|Hg17\|chr9 (88845521-88846005)
	214-694, gnl\|Mm7\|chr13 (50451549-50452032)