Non-Coding RNA Search

Ova1-OVRM10013F12

Sequence:


               
               ATTACACACCCGGACAAGGCAGCCCTTTCTGCCCCCAAGCCTTTAGTGCACCCACAGCAT
CACCGTTTCTCTGCCTGCATTGCCAAAGGAAACCCAGTTTCTTTTTGCTGGAGGCAGAGA
GACCCGGGCAGCCGCAGCAACACCACAATAAGCTTTCCAAAGATCCTCCAGTGAAACATG
GGCCCCACTCATGACCTCATCAAGTGCACACTTGCCTGGGGTCAAGCTTTGAAGAATGCA
AGGCTGTTTCAGTTCTTATATTACAAGACATTGCCATGTGAATTTGTTTCTAATCAAGCC
ACTCGTTTAATCACTTTCGTCTGGGTTTTATAAGTTCCAATTTTATTCAGCAGCCAAGAA
CCTCAAGGACATGCCTGTGTGTGTCCTTTTCTCAACCCAGGAGACTCATAGTAAAGGCTG
AGGTGAAATAATTTGTCAGAGGTCATGGAGCAAAATTAGGACAAGGTAACTCTGAATCAG
ACTCCTGGTATCTAGTATCTGGTATCATCTTTCCATTAGCATCTCTATTTTAATAGGGTG
TCACTTAAGGTAAACTTGAGTAAATCAGACAAGGGAAAAAATGTAATGAAAATGAACAAT
ACACCTTTAACTNTTCTAAAAATGTTGTGGACGGAGGTCCCTCGAGCCCTGTTATTTCGC
TATAATATTGCATTATAATAACTGTTATTATACCTGGCAGTTGGGTGGTACAGGCTTAGT
GAGGGCAGTGGATGGATGAATATTTTCAGCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTACACACCCGGACAAGGCAGCCCTTTCTGCCCCCAAGCCTTTAGTGCACCCACAGCAT
CACCGTTTCTCTGCCTGCATTGCCAAAGGAAACCCAGTTTCTTTTTGCTGGAGGCAGAGA
GACCCGGGCAGCCGCAGCAACACCACAATAAGCTTTCCAAAGATCCTCCAGTGAAACATG
GGCCCCACTCATGACCTCATCAAGTGCACACTTGCCTGGGGTCAAGCTTTGAAGAATGCA
AGGCTGTTTCAGTTCTTATATTACAAGACATTGCCATGTGAATTTGTTTCTAATCAAGCC
ACTCGTTTAATCACTTTCGTCTGGGTTTTATAAGTTCCAATTTTATTCAGCAGCCAAGAA
CCTCAAGGACATGCCTGTGTGTGTCCTTTTCTCAACCCAGGAGACTCATAGTAAAGGCTG
AGGTGAAATAATTTGTCAGAGGTCATGGAGCAAAATTAGGACAAGGTAACTCTGAATCAG
ACTCCTGGTATCTAGTATCTGGTATCATCTTTCCATTAGCATCTCTATTTTAATAGGGTG
TCACTTAAGGTAAACTTGAGTAAATCAGACAAGGGAAAAAATGTAATGAAAATGAACAAT
ACACCTTTAACTNTTCTAAAAATGTTGTGGACGGAGGTCCCTCGAGCCCTGTTATTTCGC
TATAATATTGCATTATAATAACTGTTATTATACCTGGCAGTTGGGTGGTACAGGCTTAGT
GAGGGCAGTGGATGGATGAATATTTTCAGCAGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               35-149, + strand, RNAz p=0.997178

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-149, + strand, RNAz p=0.997178

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               12-754, gnl|bosTau2|chr13 (16035637-16036377)
               

               
               12-754, gnl|Hg17|chr10 (13951133-13950096)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-754, gnl|bosTau2|chr13 (16035637-16036377)
               

               
               12-754, gnl|Hg17|chr10 (13951133-13950096)

	12-754, gnl\|bosTau2\|chr13 (16035637-16036377)
	12-754, gnl\|Hg17\|chr10 (13951133-13950096)