Non-Coding RNA Search

Ova1-OVRM10014B09

Sequence:


               
               ATTTTTAGGGGAAACAAAGTTATTTCGCTCAGTGCATCAGACGTCAAAACCCAACAACAT
ATCCTTTCTGGGACAACCTCGTTTGATGTTGGGTGGCTCTGTGTGTTGTTTTGAAGGATG
GAGTGTTTATGGCCCAGCAGGACCATAAATACTCCTTGAGCCCAGGGCAGCCCTGGATTT
GTGTGCAGTTGACACAAGGGCGGCAGAGAAGGAAATCATCTTCAGCTTATGTTTTGACAC
AGAGGAGTTTTGTTTTTCCTTTGTCAGCTCTGCATCCTCCACTGAAAACAAAACACTCCA
GCCCTGGTAAATATTGTGACGGGCAGCCCGGTGTGGTTGTTTTTTCCTTTTTTGCCATAA
CATGCTGATGGGGCGTGGGTGGGGGGTGGTGGTGATATTTTGAAAGATCAGTGGTTGTCA
TGTTGATATTCAAAGGACAACCAATTGTAGCAATCCCAGAGATGAAAAAGTGATGTAAAG
GAAAAGAGGAACCACAAGGTAATTTTTTTTTTTTATTTGAGGGAAATTGAAGGCATTTCA
AGGAGGAAGAAGCATGGGCGAGTTATGTGGGTTGTTTGCATTCCCTTCCCCTGGTGCCCA
CATTTATCATGTCTCCTCGTCCGAGCTGTACGAGAGACTTTTCAGAGATACCTGAGCTGT
GGCTTACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTAGGGGAAACAAAGTTATTTCGCTCAGTGCATCAGACGTCAAAACCCAACAACAT
ATCCTTTCTGGGACAACCTCGTTTGATGTTGGGTGGCTCTGTGTGTTGTTTTGAAGGATG
GAGTGTTTATGGCCCAGCAGGACCATAAATACTCCTTGAGCCCAGGGCAGCCCTGGATTT
GTGTGCAGTTGACACAAGGGCGGCAGAGAAGGAAATCATCTTCAGCTTATGTTTTGACAC
AGAGGAGTTTTGTTTTTCCTTTGTCAGCTCTGCATCCTCCACTGAAAACAAAACACTCCA
GCCCTGGTAAATATTGTGACGGGCAGCCCGGTGTGGTTGTTTTTTCCTTTTTTGCCATAA
CATGCTGATGGGGCGTGGGTGGGGGGTGGTGGTGATATTTTGAAAGATCAGTGGTTGTCA
TGTTGATATTCAAAGGACAACCAATTGTAGCAATCCCAGAGATGAAAAAGTGATGTAAAG
GAAAAGAGGAACCACAAGGTAATTTTTTTTTTTTATTTGAGGGAAATTGAAGGCATTTCA
AGGAGGAAGAAGCATGGGCGAGTTATGTGGGTTGTTTGCATTCCCTTCCCCTGGTGCCCA
CATTTATCATGTCTCCTCGTCCGAGCTGTACGAGAGACTTTTCAGAGATACCTGAGCTGT
GGCTTACG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-236, + strand, RNAz p=0.999969

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-236, + strand, RNAz p=0.999969

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-662, gnl|bosTau2|chr22 (26950028-26949378)
               

               
               1-662, gnl|Hg17|chr3 (65916865-65916234)
               

               
               1-662, gnl|Mm7|chr6 (94294483-94293883)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-662, gnl|bosTau2|chr22 (26950028-26949378)
               

               
               1-662, gnl|Hg17|chr3 (65916865-65916234)
               

               
               1-662, gnl|Mm7|chr6 (94294483-94293883)

	1-662, gnl\|bosTau2\|chr22 (26950028-26949378)
	1-662, gnl\|Hg17\|chr3 (65916865-65916234)
	1-662, gnl\|Mm7\|chr6 (94294483-94293883)