Non-Coding RNA Search

Ova1-OVRM10015A10

Sequence:


               
               AATACTTGATCTGAGTTATATTCAGAGTTTGCAGTTGAAAATAGGAACGGAAGGGTGGTA
TTTAAGTGTAGCTAAAAAAAGAGCATCAACTGTTGCCTGAAGTAGGTGAGCTCTCTCTCC
AGGAGAAGGTCATGGAAACCTGGTAGCAACAGTCTCTATGGAAAAGGGCTTGAATGCTTA
TCCTGGTATAAGCAGGAGAGCCTTTTAAGAGAAGAGCGATGTTAGCAAGCTTTTTCAGAG
AAAAGCTTTAAAGGTTCTGGCTTAAATATGGAGTATTGCTTTTTTCGGTAAAACGAGTCA
CGCTGAGCTGTGATACAGGTTCGTGGTATGTTTCTCTCTGCTTTCCCTGTGGAGATGTGG
ATGCATGCTAGTGCTTCCAGTCACATGCTCATCACAGACAGACAGAGCTGCTGCCTTTGG
TGTGGTTCAGGCCTTGAATGGAAAACGGTGATGATGAGGAAGATAATACTTGGAAACAAA
TACTTAGATCTCCAAGTCATGTTCATGCTTTTAAAAAAAAAAAAAATCCATCCAAAAGAA
GTCTGTTAGAACATTTTGACAGAACAGATGCTGCTTAAAGAGTATAAACAGATTTTTAAA
CCCCTCCCCCCCCAAAAAAAAAAAAGATGAAAAGAGTTTGAGTAGGGGAGAGGGGAGGTA
GTAATCATTAAGAGTACTGTATAAAATATTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATACTTGATCTGAGTTATATTCAGAGTTTGCAGTTGAAAATAGGAACGGAAGGGTGGTA
TTTAAGTGTAGCTAAAAAAAGAGCATCAACTGTTGCCTGAAGTAGGTGAGCTCTCTCTCC
AGGAGAAGGTCATGGAAACCTGGTAGCAACAGTCTCTATGGAAAAGGGCTTGAATGCTTA
TCCTGGTATAAGCAGGAGAGCCTTTTAAGAGAAGAGCGATGTTAGCAAGCTTTTTCAGAG
AAAAGCTTTAAAGGTTCTGGCTTAAATATGGAGTATTGCTTTTTTCGGTAAAACGAGTCA
CGCTGAGCTGTGATACAGGTTCGTGGTATGTTTCTCTCTGCTTTCCCTGTGGAGATGTGG
ATGCATGCTAGTGCTTCCAGTCACATGCTCATCACAGACAGACAGAGCTGCTGCCTTTGG
TGTGGTTCAGGCCTTGAATGGAAAACGGTGATGATGAGGAAGATAATACTTGGAAACAAA
TACTTAGATCTCCAAGTCATGTTCATGCTTTTAAAAAAAAAAAAAATCCATCCAAAAGAA
GTCTGTTAGAACATTTTGACAGAACAGATGCTGCTTAAAGAGTATAAACAGATTTTTAAA
CCCCTCCCCCCCCAAAAAAAAAAAAGATGAAAAGAGTTTGAGTAGGGGAGAGGGGAGGTA
GTAATCATTAAGAGTACTGTATAAAATATTACT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-274, - strand, RNAz p=0.863292
               

               
               503-658, + strand, RNAz p=0.980526

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-274, - strand, RNAz p=0.863292
               

               
               503-658, + strand, RNAz p=0.980526

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-691, gnl|bosTau2|chr27 (25888529-25889194)
               

               
               1-691, gnl|Hg17|chr8 (18658083-18657398)
               

               
               1-691, gnl|Mm7|chr8 (66332298-66331639)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-691, gnl|bosTau2|chr27 (25888529-25889194)
               

               
               1-691, gnl|Hg17|chr8 (18658083-18657398)
               

               
               1-691, gnl|Mm7|chr8 (66332298-66331639)

	40-274, - strand, RNAz p=0.863292
	503-658, + strand, RNAz p=0.980526

	1-691, gnl\|bosTau2\|chr27 (25888529-25889194)
	1-691, gnl\|Hg17\|chr8 (18658083-18657398)
	1-691, gnl\|Mm7\|chr8 (66332298-66331639)