Non-Coding RNA Search

Ova1-OVRM10015G12

Sequence:


               
               ATACAGATTTCTTGGGCATGGTCATCTTGCCCAGGAATTTCCGCCTTTCCCTACACCCCA
AACTTGTAACTGAAGAAAGGGGAAAGAAAGCCAGAACCTAGCCTTTAATGTAAACTCCAC
CCTTGGGTATTTTTCATTCCTGCTGGGAGCCCCCCAGCTCCTGCCTACTTTTCAAGCCAC
GACACCAAAGAAAGTGACTAAAAGCAGCACAGATTGAAAACTGTGAAGATATTCCTTGAA
GTCATATAAAGATATGTTGATTTGGTCCCAAATTATAGCATGCCCTCCCCACCGGCCTCT
TTCCCCAGAAGAATGCACAGAGCAAGGACCAGAGTTCTGGGTCTCCTCCCTCTCAGATGG
AAACTTACAGCAGCTGGCGGCTCAGCCCTACTTGAGCCCCAACAAGGGACATATTTGTGG
GCGAGGGACTTCCAAAGCTTCATCTGAGCAGATGTTTGGCTTGTGGGCTGGCAGGCTGGC
TTCTCTGCCAGCGTCTCTCTGGGAATTTGAAACCACTGACCTGCCCCCATGCCTGAGAGC
CCCATCTTGGCTAGAGGACAGAGGGTCAAAGGCCCATGAAGCAGCCCCCCAAATTGCCAT
GGTTACCAGGCTTCTCAACATAGGCCAGTAAAGATATTGGAATGATATTAAAGGAGATTT
TCTTTTCCACAGAANATTCTCTTAATCCCATTTTTTAATACCTATAATACTTTTCCATGT
TGCCACATAAGTTTTCACAATTTACCTTTTCTTTTTTTTCCCTGAAGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACAGATTTCTTGGGCATGGTCATCTTGCCCAGGAATTTCCGCCTTTCCCTACACCCCA
AACTTGTAACTGAAGAAAGGGGAAAGAAAGCCAGAACCTAGCCTTTAATGTAAACTCCAC
CCTTGGGTATTTTTCATTCCTGCTGGGAGCCCCCCAGCTCCTGCCTACTTTTCAAGCCAC
GACACCAAAGAAAGTGACTAAAAGCAGCACAGATTGAAAACTGTGAAGATATTCCTTGAA
GTCATATAAAGATATGTTGATTTGGTCCCAAATTATAGCATGCCCTCCCCACCGGCCTCT
TTCCCCAGAAGAATGCACAGAGCAAGGACCAGAGTTCTGGGTCTCCTCCCTCTCAGATGG
AAACTTACAGCAGCTGGCGGCTCAGCCCTACTTGAGCCCCAACAAGGGACATATTTGTGG
GCGAGGGACTTCCAAAGCTTCATCTGAGCAGATGTTTGGCTTGTGGGCTGGCAGGCTGGC
TTCTCTGCCAGCGTCTCTCTGGGAATTTGAAACCACTGACCTGCCCCCATGCCTGAGAGC
CCCATCTTGGCTAGAGGACAGAGGGTCAAAGGCCCATGAAGCAGCCCCCCAAATTGCCAT
GGTTACCAGGCTTCTCAACATAGGCCAGTAAAGATATTGGAATGATATTAAAGGAGATTT
TCTTTTCCACAGAANATTCTCTTAATCCCATTTTTTAATACCTATAATACTTTTCCATGT
TGCCACATAAGTTTTCACAATTTACCTTTTCTTTTTTTTCCCTGAAGTGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-119, - strand, RNAz p=0.836215
               

               
               626-731, - strand, RNAz p=0.820182

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.836215
               

               
               626-731, - strand, RNAz p=0.820182

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-740, gnl|bosTau2|chr22 (7863293-7864039)
               

               
               1-740, gnl|Hg17|chr3 (8571484-8572400)
               

               
               1-740, gnl|Mm7|chr6 (112481719-112482570)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-740, gnl|bosTau2|chr22 (7863293-7864039)
               

               
               1-740, gnl|Hg17|chr3 (8571484-8572400)
               

               
               1-740, gnl|Mm7|chr6 (112481719-112482570)

	1-119, - strand, RNAz p=0.836215
	626-731, - strand, RNAz p=0.820182

	1-740, gnl\|bosTau2\|chr22 (7863293-7864039)
	1-740, gnl\|Hg17\|chr3 (8571484-8572400)
	1-740, gnl\|Mm7\|chr6 (112481719-112482570)