Non-Coding RNA Search

Ova1-OVRM10017D06

Sequence:


               
               ATTCCAGGGCCGCTCTGAGGTCTGCAGCCGGGGACGGCGCCACACGGGGGTCGAGCAGGG
CGCGGCGGCGGCGGGGCGCTCCGGGGAGGCCCGGGCAGCTGATGGTTTTGGCGAAGTATC
TTAAGGTAGCTGGGCCCACCCCCTCTCCCCCACCTACCTCTTGTCCTCCCCCCCACACCA
CCACCACCCTGGCTCCCCTCCCTCATGACCGCCTGGATCCTCCTTCCTGTCAGCCTGTCC
GCATTCTCCATCACTGGCCTATGGACCGTGTATGCCATGGCCGTGATGAACCACCACGTG
TGCCCCGTGGAGAACTGGTCCTACACCGAATCCTGCTCTCCTGACCCCACTGAGCAAGGG
GGCCCCACGACCTGCTGCACTCTGGACGATGTCCCCCTCATCAGCAGGTGCGGCACGTAC
CCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCCAGGGCCGCTCTGAGGTCTGCAGCCGGGGACGGCGCCACACGGGGGTCGAGCAGGG
CGCGGCGGCGGCGGGGCGCTCCGGGGAGGCCCGGGCAGCTGATGGTTTTGGCGAAGTATC
TTAAGGTAGCTGGGCCCACCCCCTCTCCCCCACCTACCTCTTGTCCTCCCCCCCACACCA
CCACCACCCTGGCTCCCCTCCCTCATGACCGCCTGGATCCTCCTTCCTGTCAGCCTGTCC
GCATTCTCCATCACTGGCCTATGGACCGTGTATGCCATGGCCGTGATGAACCACCACGTG
TGCCCCGTGGAGAACTGGTCCTACACCGAATCCTGCTCTCCTGACCCCACTGAGCAAGGG
GGCCCCACGACCTGCTGCACTCTGGACGATGTCCCCCTCATCAGCAGGTGCGGCACGTAC
CCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               87-200, - strand, RNAz p=0.997342

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-200, - strand, RNAz p=0.997342

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               103-212, - strand, RNAmicro p=0.999959

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               103-212, - strand, RNAmicro p=0.999959

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               87-271, gnl|bosTau2|chr11 (36398988-36399175)
               

               
               87-271, gnl|Hg17|chr2 (85740847-85740663)
               

               
               87-271, gnl|Mm7|chr6 (72374060-72374245)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-271, gnl|bosTau2|chr11 (36398988-36399175)
               

               
               87-271, gnl|Hg17|chr2 (85740847-85740663)
               

               
               87-271, gnl|Mm7|chr6 (72374060-72374245)

	87-271, gnl\|bosTau2\|chr11 (36398988-36399175)
	87-271, gnl\|Hg17\|chr2 (85740847-85740663)
	87-271, gnl\|Mm7\|chr6 (72374060-72374245)