Non-Coding RNA Search

Ova1-OVRM10017G10

Sequence:


               
               CTGCATCCTCATAGACACTATGTCGAGTTCTTAACACACTGAGCACAGTAAGAACTCCTG
GAATCATTTCTTTGTAATGAGAATCTGTTTATTTCTGTTCTCATCCAATTGAGGTCATAA
TTATTTCCCAGTTCACTGGAAAGCACCTCACTGTTACGTTCATGAATTTATTGTAGAGAC
TCTTTTGGTTGTTAATCTAGAACTCCTCAATTTCCTCAGAAAAATACAGAATTACtgtat
tagtttcctggggctgccataacaaattgccacaaattgggtaatttacaacaacagaaa
tttatgctctcacaggaggctggatatctgaaatcaaggtgttggcaaggttggctactt
ttggagactctgagggcgaatctgttccTCTTCCTGTAGCTCTTTCCTCGTTGCTGATGG
TTGCTGACAGTCTTGGTGCTTTTTGGCTTCCAGCTGCATCCCTCCAGTCTCTGCTTCTGT
CGTCACGTGGTACTCTCCCTCTTGGTCTCAGTCCAAATTCTTCTCATCTTTTAAGACAGC
AGTCATGCTAGACTTAGGGCCTATTCTAAGTGGTATAACCTCAGCTTAATTTAATTACAT
CTGCAAAGACCCTTTTCCCAATATTGTCACATTTACAGGTTCCAGATGGGCTTGAATTTG
GTGGAAGGGTTGAGGAGGGGCAGACACTGGATAATTGTAAAGAACCCAGAANAAAATATG
GCTTGTCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCATCCTCATAGACACTATGTCGAGTTCTTAACACACTGAGCACAGTAAGAACTCCTG
GAATCATTTCTTTGTAATGAGAATCTGTTTATTTCTGTTCTCATCCAATTGAGGTCATAA
TTATTTCCCAGTTCACTGGAAAGCACCTCACTGTTACGTTCATGAATTTATTGTAGAGAC
TCTTTTGGTTGTTAATCTAGAACTCCTCAATTTCCTCAGAAAAATACAGAATTACtgtat
tagtttcctggggctgccataacaaattgccacaaattgggtaatttacaacaacagaaa
tttatgctctcacaggaggctggatatctgaaatcaaggtgttggcaaggttggctactt
ttggagactctgagggcgaatctgttccTCTTCCTGTAGCTCTTTCCTCGTTGCTGATGG
TTGCTGACAGTCTTGGTGCTTTTTGGCTTCCAGCTGCATCCCTCCAGTCTCTGCTTCTGT
CGTCACGTGGTACTCTCCCTCTTGGTCTCAGTCCAAATTCTTCTCATCTTTTAAGACAGC
AGTCATGCTAGACTTAGGGCCTATTCTAAGTGGTATAACCTCAGCTTAATTTAATTACAT
CTGCAAAGACCCTTTTCCCAATATTGTCACATTTACAGGTTCCAGATGGGCTTGAATTTG
GTGGAAGGGTTGAGGAGGGGCAGACACTGGATAATTGTAAAGAACCCAGAANAAAATATG
GCTTGTCCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               312-430, + strand, RNAz p=0.829038

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-430, + strand, RNAz p=0.829038

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               293-391, + strand, RNAmicro p=0.948513

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               293-391, + strand, RNAmicro p=0.948513

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               238-659, gnl|bosTau2|chr14 (47942120-47942542)
               

               
               238-659, gnl|Hg17|chr8 (87758619-87758034)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               238-659, gnl|bosTau2|chr14 (47942120-47942542)
               

               
               238-659, gnl|Hg17|chr8 (87758619-87758034)

	238-659, gnl\|bosTau2\|chr14 (47942120-47942542)
	238-659, gnl\|Hg17\|chr8 (87758619-87758034)