Non-Coding RNA Search

Ova1-OVRM10021F10

Sequence:


               
               TTTGAGCCCACTGGCATTTGTAAAGTTAAACACTTTTGGTGCCATAACGGGGACAACAGT
AACAAGAATCACTAAAAGTACCCATTGTACTTCAGTGACATCTATAAAAGGAAAACCGTT
TCTGCAAAGAATAAAGCTGGTCTGAAGGAAGCATATTATTTTGCATATTTTATGTACATA
CTTTCCAAGAAATACGACCTTTATTTCCTATTTGGAGTGGAGTGTAATCAGGACTTGAGT
AGCTAGTGTAACGGGATCATTAAAAGGGATATTTTCACTGACATTAGAGGTCTAAATGGC
CACTAGGCCTTATATACAACCTTGGCTTTTTCCTGTCTACCCAGAGTTAATAAGTGATAA
GGCCAGGAGAGAGATAAATCACAGAAATCCCTGTCCAAAGAAAACATATTGACTACAGCC
AAGCAAATAACAGACCATAACCAACGGTCCCATTCATCATTCATGTAATAGGGATATAAA
GTATTTCCTACCAATGAAACCGTATAGAAGGAAAAGGCAGATAAGCTTCCCCAATCTAAG
GCATGTGATTTGGTTATTAAGGGACATGAACTATTTGTCACATGGCTTTAATCTTTAAGA
TGTGTTGCCATTTCTAAACTATAAATTTCAGGTCAGGGATTAGAAAGCTATTAACAATAA
AGGTAGGAACTGAACTTTATATGCATTCTTGCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGAGCCCACTGGCATTTGTAAAGTTAAACACTTTTGGTGCCATAACGGGGACAACAGT
AACAAGAATCACTAAAAGTACCCATTGTACTTCAGTGACATCTATAAAAGGAAAACCGTT
TCTGCAAAGAATAAAGCTGGTCTGAAGGAAGCATATTATTTTGCATATTTTATGTACATA
CTTTCCAAGAAATACGACCTTTATTTCCTATTTGGAGTGGAGTGTAATCAGGACTTGAGT
AGCTAGTGTAACGGGATCATTAAAAGGGATATTTTCACTGACATTAGAGGTCTAAATGGC
CACTAGGCCTTATATACAACCTTGGCTTTTTCCTGTCTACCCAGAGTTAATAAGTGATAA
GGCCAGGAGAGAGATAAATCACAGAAATCCCTGTCCAAAGAAAACATATTGACTACAGCC
AAGCAAATAACAGACCATAACCAACGGTCCCATTCATCATTCATGTAATAGGGATATAAA
GTATTTCCTACCAATGAAACCGTATAGAAGGAAAAGGCAGATAAGCTTCCCCAATCTAAG
GCATGTGATTTGGTTATTAAGGGACATGAACTATTTGTCACATGGCTTTAATCTTTAAGA
TGTGTTGCCATTTCTAAACTATAAATTTCAGGTCAGGGATTAGAAAGCTATTAACAATAA
AGGTAGGAACTGAACTTTATATGCATTCTTGCCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               283-402, - strand, RNAz p=0.601568

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               283-402, - strand, RNAz p=0.601568

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-695, gnl|bosTau2|chr7 (47419391-47418704)
               

               
               7-695, gnl|Hg17|chr5 (158129252-158128562)
               

               
               7-695, gnl|Mm7|chr11 (44889577-44890265)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-695, gnl|bosTau2|chr7 (47419391-47418704)
               

               
               7-695, gnl|Hg17|chr5 (158129252-158128562)
               

               
               7-695, gnl|Mm7|chr11 (44889577-44890265)

	7-695, gnl\|bosTau2\|chr7 (47419391-47418704)
	7-695, gnl\|Hg17\|chr5 (158129252-158128562)
	7-695, gnl\|Mm7\|chr11 (44889577-44890265)