Non-Coding RNA Search

Ova1-OVRM10021F12

Sequence:


               
               AATATCATTATTATCGTAATAGTACACATCTTATAATCACTAACACTGCATTCTTGCACT
CTAAAATTGACTATTGGCTAAGAAACTACAATAGACCAAAAAATAAATCGATGAATACAC
CTATCTAGAAAAAAAGAAGGTAAGAAAATTGGAGAGGGCACCCAGGTGACTAATATGGCT
GGTGGGAAGGTGCCTGACGTGGCGGCATCGACTTCAGCTCCAAAGGTGACCTGGAACAGC
TGGACCTTGGAGGAGCATTCGGATGACCCCGAAGAGAGTATGTGTTTGGACAGGGAATTG
GGAAATGAGGGTACTCCCCCTTCCTTGGGAGAAGAATCTGGAATCCCTGAAGCCACAAAT
AATAAATGGAAAAGCTATTAGAACATTTTGTGAGGTCTTCAAGAGACAAATTGTACTGCT
GAAAGTACTGCCTAAGATTGATGGGATTTTTGTCTTTAGTGGTTGAATTCAAGTGTTACC
TCCCCTTCAGTTGTCCTTTCTGGTTTTCCGATTAAATCCATAAACATTAGAGTTGTGCAA
CCCTCGGTTATCCTAGAATGACAGATGCTGGCTAGGGCTCTGGGCAGATTTCTGCCTTGG
GAATAGAAAGACTAGGGTTCCGGCCAATCTGGAGCCCGAAAAAGTCACTTACTCTTTCCC
AGCACCTGCAGTGTTTGGAAAATTGAGGAGGTGTTGAACTTGATGATTTATGGGTCTCTT
TTAGCTCCCCGTTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATCATTATTATCGTAATAGTACACATCTTATAATCACTAACACTGCATTCTTGCACT
CTAAAATTGACTATTGGCTAAGAAACTACAATAGACCAAAAAATAAATCGATGAATACAC
CTATCTAGAAAAAAAGAAGGTAAGAAAATTGGAGAGGGCACCCAGGTGACTAATATGGCT
GGTGGGAAGGTGCCTGACGTGGCGGCATCGACTTCAGCTCCAAAGGTGACCTGGAACAGC
TGGACCTTGGAGGAGCATTCGGATGACCCCGAAGAGAGTATGTGTTTGGACAGGGAATTG
GGAAATGAGGGTACTCCCCCTTCCTTGGGAGAAGAATCTGGAATCCCTGAAGCCACAAAT
AATAAATGGAAAAGCTATTAGAACATTTTGTGAGGTCTTCAAGAGACAAATTGTACTGCT
GAAAGTACTGCCTAAGATTGATGGGATTTTTGTCTTTAGTGGTTGAATTCAAGTGTTACC
TCCCCTTCAGTTGTCCTTTCTGGTTTTCCGATTAAATCCATAAACATTAGAGTTGTGCAA
CCCTCGGTTATCCTAGAATGACAGATGCTGGCTAGGGCTCTGGGCAGATTTCTGCCTTGG
GAATAGAAAGACTAGGGTTCCGGCCAATCTGGAGCCCGAAAAAGTCACTTACTCTTTCCC
AGCACCTGCAGTGTTTGGAAAATTGAGGAGGTGTTGAACTTGATGATTTATGGGTCTCTT
TTAGCTCCCCGTTGACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               38-128, - strand, RNAz p=0.52871

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-128, - strand, RNAz p=0.52871

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               7-353, gnl|bosTau2|chr6 (54581762-54581389)
               

               
               7-353, gnl|canFam2|chr32 (8550389-8550803)
               

               
               7-353, gnl|dasNov1|scaffold_6859 (48405-48929)
               

               
               7-353, gnl|echTel1|scaffold_296220 (43757-44188)
               

               
               7-353, gnl|hg17|chr4 (82747584-82748011)
               

               
               7-353, gnl|Hg17|chr4 (82747957-82747596)
               

               
               7-353, gnl|mm7|chr5 (98465195-98465588)
               

               
               7-353, gnl|Mm7|chr5 (98465540-98465207)
               

               
               7-353, gnl|panTro1|chr3 (50978574-50978151)
               

               
               7-353, gnl|rheMac2|chr5 (48099655-48099244)
               

               
               7-353, gnl|rn3|chr14 (11661651-11661259)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-353, gnl|bosTau2|chr6 (54581762-54581389)
               

               
               7-353, gnl|canFam2|chr32 (8550389-8550803)
               

               
               7-353, gnl|dasNov1|scaffold_6859 (48405-48929)
               

               
               7-353, gnl|echTel1|scaffold_296220 (43757-44188)
               

               
               7-353, gnl|hg17|chr4 (82747584-82748011)
               

               
               7-353, gnl|Hg17|chr4 (82747957-82747596)
               

               
               7-353, gnl|mm7|chr5 (98465195-98465588)
               

               
               7-353, gnl|Mm7|chr5 (98465540-98465207)
               

               
               7-353, gnl|panTro1|chr3 (50978574-50978151)
               

               
               7-353, gnl|rheMac2|chr5 (48099655-48099244)
               

               
               7-353, gnl|rn3|chr14 (11661651-11661259)

	7-353, gnl\|bosTau2\|chr6 (54581762-54581389)
	7-353, gnl\|canFam2\|chr32 (8550389-8550803)
	7-353, gnl\|dasNov1\|scaffold_6859 (48405-48929)
	7-353, gnl\|echTel1\|scaffold_296220 (43757-44188)
	7-353, gnl\|hg17\|chr4 (82747584-82748011)
	7-353, gnl\|Hg17\|chr4 (82747957-82747596)
	7-353, gnl\|mm7\|chr5 (98465195-98465588)
	7-353, gnl\|Mm7\|chr5 (98465540-98465207)
	7-353, gnl\|panTro1\|chr3 (50978574-50978151)
	7-353, gnl\|rheMac2\|chr5 (48099655-48099244)
	7-353, gnl\|rn3\|chr14 (11661651-11661259)