Non-Coding RNA Search

Ova1-OVRM10021H07

Sequence:


               
               TTAGAAACCCAGAAAGCGACATGGCTGCCACCAGCCGGAAAGAAAGGCTTTTGAAGCTGC
CGGCGGCTGCCTTACCCAAGTCACCGTCACTTGCGCCAGGTCCAGCAGCTCCCATCCGAG
AGAGGCCTAAGAAGTGGCTGGTCTATCCACAACCACCGAAGAGCTCCCGCATGTCTCCGT
CGGTTCTGCGCTGGCTCCAGGGCCTGGATCTCAGCTTCTTCCCTAGGAACATCAGCAGGT
GCTGGAGCGGTCGGGCCCTGGCCGCCTGGCGGGCGCATCCGCCGGAGCAGAGCAGTCTCC
TGGTCTGCGCCGCCCACCCCGCAGTAACGCAGGGGCTTTCCTGGGATTGCCTTGCCCGCT
CTACTCCTTCACTCGTCACACGCACACGCACAAGCACACTCACACACTCGCCCCCTTAGG
GAGCTGATCTGCAAAAGGGTGAAGCATTTCATTTATTCAATCAATTCTATCATTCCGTTT
TAGACTCAGCTAATATAGAATGCGTTGGTGACAACCCCCAAATAAAATAACCTAGGCTCT
TTTTCAGGGACACTGGACATAAGTACTAGTGCGGATCCGTTTACTTTTTATTAGCCATAG
CATCTGGTTTGAAGGTTATTGGGGATTGAAAAAGTTGCTCCTTATAACTGAAGCCTCTCT
GAGCATAACTGGCAGTTAATACTTGCACTGGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGAAACCCAGAAAGCGACATGGCTGCCACCAGCCGGAAAGAAAGGCTTTTGAAGCTGC
CGGCGGCTGCCTTACCCAAGTCACCGTCACTTGCGCCAGGTCCAGCAGCTCCCATCCGAG
AGAGGCCTAAGAAGTGGCTGGTCTATCCACAACCACCGAAGAGCTCCCGCATGTCTCCGT
CGGTTCTGCGCTGGCTCCAGGGCCTGGATCTCAGCTTCTTCCCTAGGAACATCAGCAGGT
GCTGGAGCGGTCGGGCCCTGGCCGCCTGGCGGGCGCATCCGCCGGAGCAGAGCAGTCTCC
TGGTCTGCGCCGCCCACCCCGCAGTAACGCAGGGGCTTTCCTGGGATTGCCTTGCCCGCT
CTACTCCTTCACTCGTCACACGCACACGCACAAGCACACTCACACACTCGCCCCCTTAGG
GAGCTGATCTGCAAAAGGGTGAAGCATTTCATTTATTCAATCAATTCTATCATTCCGTTT
TAGACTCAGCTAATATAGAATGCGTTGGTGACAACCCCCAAATAAAATAACCTAGGCTCT
TTTTCAGGGACACTGGACATAAGTACTAGTGCGGATCCGTTTACTTTTTATTAGCCATAG
CATCTGGTTTGAAGGTTATTGGGGATTGAAAAAGTTGCTCCTTATAACTGAAGCCTCTCT
GAGCATAACTGGCAGTTAATACTTGCACTGGGAAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               2-92, - strand, RNAz p=0.924733
               

               
               133-295, + strand, RNAz p=0.893216

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-92, - strand, RNAz p=0.924733
               

               
               133-295, + strand, RNAz p=0.893216

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               2-295, gnl|bosTau2|chr27 (2133862-2134156)
               

               
               2-295, gnl|dasNov1|scaffold_52014 (1290-980)
               

               
               2-295, gnl|echTel1|scaffold_304648 (42373-42666)
               

               
               2-295, gnl|hg17|chr4 (177491601-177491899)
               

               
               2-295, gnl|Hg17|chr4 (177491881-177491600)
               

               
               2-295, gnl|mm7|chr8 (53370030-53369698)
               

               
               2-295, gnl|Mm7|chr8 (53369713-53369968)
               

               
               2-295, gnl|monDom2|scaffold_9 (55693490-55693782)
               

               
               2-295, gnl|oryCun1|scaffold_115234 (491-196)
               

               
               2-295, gnl|panTro1|chr3_random (26575749-26576047)
               

               
               2-295, gnl|rheMac2|chr5 (168279535-168279833)
               

               
               2-295, gnl|rn3|chr16_random (723282-722949)
               


               
               377-665, gnl|bosTau2|chr27 (2134316-2134603)
               

               
               377-665, gnl|Hg17|chr4 (177491523-177490932)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-295, gnl|bosTau2|chr27 (2133862-2134156)
               

               
               2-295, gnl|dasNov1|scaffold_52014 (1290-980)
               

               
               2-295, gnl|echTel1|scaffold_304648 (42373-42666)
               

               
               2-295, gnl|hg17|chr4 (177491601-177491899)
               

               
               2-295, gnl|Hg17|chr4 (177491881-177491600)
               

               
               2-295, gnl|mm7|chr8 (53370030-53369698)
               

               
               2-295, gnl|Mm7|chr8 (53369713-53369968)
               

               
               2-295, gnl|monDom2|scaffold_9 (55693490-55693782)
               

               
               2-295, gnl|oryCun1|scaffold_115234 (491-196)
               

               
               2-295, gnl|panTro1|chr3_random (26575749-26576047)
               

               
               2-295, gnl|rheMac2|chr5 (168279535-168279833)
               

               
               2-295, gnl|rn3|chr16_random (723282-722949)
               


               
               377-665, gnl|bosTau2|chr27 (2134316-2134603)
               

               
               377-665, gnl|Hg17|chr4 (177491523-177490932)

	2-92, - strand, RNAz p=0.924733
	133-295, + strand, RNAz p=0.893216

	2-295, gnl\|bosTau2\|chr27 (2133862-2134156)
	2-295, gnl\|dasNov1\|scaffold_52014 (1290-980)
	2-295, gnl\|echTel1\|scaffold_304648 (42373-42666)
	2-295, gnl\|hg17\|chr4 (177491601-177491899)
	2-295, gnl\|Hg17\|chr4 (177491881-177491600)
	2-295, gnl\|mm7\|chr8 (53370030-53369698)
	2-295, gnl\|Mm7\|chr8 (53369713-53369968)
	2-295, gnl\|monDom2\|scaffold_9 (55693490-55693782)
	2-295, gnl\|oryCun1\|scaffold_115234 (491-196)
	2-295, gnl\|panTro1\|chr3_random (26575749-26576047)
	2-295, gnl\|rheMac2\|chr5 (168279535-168279833)
	2-295, gnl\|rn3\|chr16_random (723282-722949)

	377-665, gnl\|bosTau2\|chr27 (2134316-2134603)
	377-665, gnl\|Hg17\|chr4 (177491523-177490932)