Non-Coding RNA Search

Ova1-OVRM10025B12

Sequence:


               
               AGACCTGTTTTAGTATTCTTTCCTTTGAGTTACCTTTCCACAGAGAAGACTTTGCAAAGG
TAGTTCTCCAGGAAAGCAGGGAGCTTTAGGGCTGTGGATACAAAGATTTAAATACTTTCA
GCCACTGTATATATAGCACATAAGAAGAAGGGGAGGGCAGAGACATGTGCCTTCTGTAAA
CTTGAGAGGAAGAAATATACGCTCTAGCTCAGATTCCAAAAACTTAGGTGTCCTGTTAGG
CTGTCTCTTCTGACTTAATAGTTTTTTATTTTTCCTTTTCAGTACCTAATTGATGGCCAG
TAATGAGTTTTAGTCCTAAGATAGCATAGACCCATAATTTGGTTCAGTTGGCTGAAAAGA
TAGAATTTTTTGAAGTATCTTTTGTGTGTTTTATTCCATTCCATCAGCATGTTGTAGGGG
TCTATAGAGAAAGCCTGGGCATGAGCTAAAATCAGAAGTGTGTTCAGGTGCAGAGGGGCT
TGTTTGTGGTTTAGGAACCTATGGAGTGGGAGTCAGGACAGGGGTCCTGAAAGGATATGT
GCAGAGGTGAGTATCCAAAGGGCAACAGATGTAAATCTGTAGGATGAGGGGAAGCCACTC
ACATCCAGTGGTTTGCACTTTAAGACAGACTTTTGTCATTAAAAAAAAAAAAAAACCCTC
ACTGGGGACAGAGCTTTTAGATATCATTTTACAGGTAATGGGGTAGTTCCCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACCTGTTTTAGTATTCTTTCCTTTGAGTTACCTTTCCACAGAGAAGACTTTGCAAAGG
TAGTTCTCCAGGAAAGCAGGGAGCTTTAGGGCTGTGGATACAAAGATTTAAATACTTTCA
GCCACTGTATATATAGCACATAAGAAGAAGGGGAGGGCAGAGACATGTGCCTTCTGTAAA
CTTGAGAGGAAGAAATATACGCTCTAGCTCAGATTCCAAAAACTTAGGTGTCCTGTTAGG
CTGTCTCTTCTGACTTAATAGTTTTTTATTTTTCCTTTTCAGTACCTAATTGATGGCCAG
TAATGAGTTTTAGTCCTAAGATAGCATAGACCCATAATTTGGTTCAGTTGGCTGAAAAGA
TAGAATTTTTTGAAGTATCTTTTGTGTGTTTTATTCCATTCCATCAGCATGTTGTAGGGG
TCTATAGAGAAAGCCTGGGCATGAGCTAAAATCAGAAGTGTGTTCAGGTGCAGAGGGGCT
TGTTTGTGGTTTAGGAACCTATGGAGTGGGAGTCAGGACAGGGGTCCTGAAAGGATATGT
GCAGAGGTGAGTATCCAAAGGGCAACAGATGTAAATCTGTAGGATGAGGGGAAGCCACTC
ACATCCAGTGGTTTGCACTTTAAGACAGACTTTTGTCATTAAAAAAAAAAAAAAACCCTC
ACTGGGGACAGAGCTTTTAGATATCATTTTACAGGTAATGGGGTAGTTCCCGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               493-601, - strand, RNAz p=0.591174

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               493-601, - strand, RNAz p=0.591174

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-273, gnl|bosTau2|chr21 (34598085-34598347)
               

               
               1-273, gnl|Hg17|chr15 (41948434-41948713)
               


               
               364-613, gnl|bosTau2|chr21 (34598731-34598976)
               

               
               364-613, gnl|dasNov1|scaffold_4053 (48396-48182)
               

               
               364-613, gnl|hg17|chr15 (41948879-41949091)
               

               
               364-613, gnl|Hg17|chr15 (41948904-41949169)
               

               
               364-613, gnl|panTro1|chr16 (41860231-41860443)
               

               
               364-613, gnl|rheMac2|chr7 (22265135-22265345)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-273, gnl|bosTau2|chr21 (34598085-34598347)
               

               
               1-273, gnl|Hg17|chr15 (41948434-41948713)
               


               
               364-613, gnl|bosTau2|chr21 (34598731-34598976)
               

               
               364-613, gnl|dasNov1|scaffold_4053 (48396-48182)
               

               
               364-613, gnl|hg17|chr15 (41948879-41949091)
               

               
               364-613, gnl|Hg17|chr15 (41948904-41949169)
               

               
               364-613, gnl|panTro1|chr16 (41860231-41860443)
               

               
               364-613, gnl|rheMac2|chr7 (22265135-22265345)

	1-273, gnl\|bosTau2\|chr21 (34598085-34598347)
	1-273, gnl\|Hg17\|chr15 (41948434-41948713)

	364-613, gnl\|bosTau2\|chr21 (34598731-34598976)
	364-613, gnl\|dasNov1\|scaffold_4053 (48396-48182)
	364-613, gnl\|hg17\|chr15 (41948879-41949091)
	364-613, gnl\|Hg17\|chr15 (41948904-41949169)
	364-613, gnl\|panTro1\|chr16 (41860231-41860443)
	364-613, gnl\|rheMac2\|chr7 (22265135-22265345)