Non-Coding RNA Search

Ova1-OVRM10027E07

Sequence:


               
               AAACAAAGGCTTCTGGATAATTGACCAGCATCAAGTCATATTGATGGGAATCAGCAACTT
GAGTGAGGAAAAGGAGTAGCTTTTGTACCTCCGTTTTTTCCTGTCCCCTCCATGCAATTT
TAATTCCTGATATTTCCAGCCCCATTTATCTGTTGTCACCTGACGCTGTGTTTGGGGACA
CAGCTGTGGGTCTGGAACAGCCCGTGATCTCTCTAGAGTGCATCAAAGAACTGATTTTTA
AAACAGAAGAACGCTCCCTCGTGGCTCTTTGCTACACTGTCTCTTGATGCCCTTCCCCAA
CCTAAAAAGTCAGTGGAAAGTTTTGTAACCTTCATATTTGCATAGGCTCTGTAAAAATAC
CAAATGGCCCAGGTTACAAAAGAATACTTTCTGGTTTTCTGGCATAGAAGATATATTTTG
GAAAAAAAAAAAAATTGAGGAGCACTATTTATATATATTTTTGAGCTTTTTCTATCTCAA
GAAATATATTTAGTTGGAAAATGACTCTGAATGTGATAGAGTGTGCCTTTAGAGGCCACA
GCTTCGGTTCAAATGACAGTGTTGTCAACATTAGCCATCTAATGTTCACTTCTTACGAAA
AAAGACTGATAAGATCAGNTCTAGCATTATTAACATTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAAAGGCTTCTGGATAATTGACCAGCATCAAGTCATATTGATGGGAATCAGCAACTT
GAGTGAGGAAAAGGAGTAGCTTTTGTACCTCCGTTTTTTCCTGTCCCCTCCATGCAATTT
TAATTCCTGATATTTCCAGCCCCATTTATCTGTTGTCACCTGACGCTGTGTTTGGGGACA
CAGCTGTGGGTCTGGAACAGCCCGTGATCTCTCTAGAGTGCATCAAAGAACTGATTTTTA
AAACAGAAGAACGCTCCCTCGTGGCTCTTTGCTACACTGTCTCTTGATGCCCTTCCCCAA
CCTAAAAAGTCAGTGGAAAGTTTTGTAACCTTCATATTTGCATAGGCTCTGTAAAAATAC
CAAATGGCCCAGGTTACAAAAGAATACTTTCTGGTTTTCTGGCATAGAAGATATATTTTG
GAAAAAAAAAAAAATTGAGGAGCACTATTTATATATATTTTTGAGCTTTTTCTATCTCAA
GAAATATATTTAGTTGGAAAATGACTCTGAATGTGATAGAGTGTGCCTTTAGAGGCCACA
GCTTCGGTTCAAATGACAGTGTTGTCAACATTAGCCATCTAATGTTCACTTCTTACGAAA
AAAGACTGATAAGATCAGNTCTAGCATTATTAACATTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               2-120, - strand, RNAz p=0.686755

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, - strand, RNAz p=0.686755

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               45-138, + strand, RNAmicro p=0.990481

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               45-138, + strand, RNAmicro p=0.990481

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               2-374, gnl|bosTau2|chr6 (30977270-30977619)
               

               
               2-374, gnl|Hg17|chr4 (41471128-41471530)
               


               
               430-618, gnl|bosTau2|chr6 (30977632-30977822)
               

               
               430-618, gnl|Hg17|chr4 (41471544-41471730)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-374, gnl|bosTau2|chr6 (30977270-30977619)
               

               
               2-374, gnl|Hg17|chr4 (41471128-41471530)
               


               
               430-618, gnl|bosTau2|chr6 (30977632-30977822)
               

               
               430-618, gnl|Hg17|chr4 (41471544-41471730)

	2-374, gnl\|bosTau2\|chr6 (30977270-30977619)
	2-374, gnl\|Hg17\|chr4 (41471128-41471530)

	430-618, gnl\|bosTau2\|chr6 (30977632-30977822)
	430-618, gnl\|Hg17\|chr4 (41471544-41471730)