Non-Coding RNA Search

Ova1-OVRM10028E11

Sequence:


               
               TTAACCTGCAATCTTTTATGCTTTGTCCTCCCACTGGTACCCTGGAAACAGTTGGGCTCT
TGGTCCCCAGTTTCCTTGCAGTGGTTCCCAGAGCCAAGTGGGCAGAGGAACAATGCAGCA
ACATGTTGGGGTCTGTCGCCTCCAGGGCCTCAGCCCACCAACCCCCTTGCTCTCTGCCCA
GAGCCTGCCTCCCTAAGACCCCCACTTTTGCACTCCAGAGTCTGCCCTTCCCCCCTGGCT
GCTGACAGTCCCTGTCCCCACAGGCGCCATGTCTGTCATCCAGTCCTTGGGAGCTGTCAG
GCCTCATCCAGAATCTCCTCCATCAACTCCCCCGGGGTCTGTCTGGCTGCGGAGCACATC
AGAGGGACTCGGAAGTGGTGGCCTCCTCTCCTGCTGAGCCCCTCCCGCCTGAGCCTGGTA
CTCACAGAGGAGACAAGGAGCTGTTCCTGCTGGCCCAGCGCTGCCGGAAGCTCCCTCCAT
GCCAGAGCTCTGCCACCCATGCCCCATTTTACAGATGGTGGGAGACTCTTTGGCCAAGGG
CTCAGGCTGGGTGAGGGGCACGACCTGGGTTTGAAACTGCAAGGCTCCACGGCTATACCT
TTGCTCACCTTGCTCTGTAGACTAGGAGCTTCCAGGGACTGGTCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAACCTGCAATCTTTTATGCTTTGTCCTCCCACTGGTACCCTGGAAACAGTTGGGCTCT
TGGTCCCCAGTTTCCTTGCAGTGGTTCCCAGAGCCAAGTGGGCAGAGGAACAATGCAGCA
ACATGTTGGGGTCTGTCGCCTCCAGGGCCTCAGCCCACCAACCCCCTTGCTCTCTGCCCA
GAGCCTGCCTCCCTAAGACCCCCACTTTTGCACTCCAGAGTCTGCCCTTCCCCCCTGGCT
GCTGACAGTCCCTGTCCCCACAGGCGCCATGTCTGTCATCCAGTCCTTGGGAGCTGTCAG
GCCTCATCCAGAATCTCCTCCATCAACTCCCCCGGGGTCTGTCTGGCTGCGGAGCACATC
AGAGGGACTCGGAAGTGGTGGCCTCCTCTCCTGCTGAGCCCCTCCCGCCTGAGCCTGGTA
CTCACAGAGGAGACAAGGAGCTGTTCCTGCTGGCCCAGCGCTGCCGGAAGCTCCCTCCAT
GCCAGAGCTCTGCCACCCATGCCCCATTTTACAGATGGTGGGAGACTCTTTGGCCAAGGG
CTCAGGCTGGGTGAGGGGCACGACCTGGGTTTGAAACTGCAAGGCTCCACGGCTATACCT
TTGCTCACCTTGCTCTGTAGACTAGGAGCTTCCAGGGACTGGTCTGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               5-121, + strand, RNAz p=0.999089

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-121, + strand, RNAz p=0.999089

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               5-524, gnl|bosTau2|chr7 (15982165-15982698)
               

               
               5-524, gnl|Hg17|chr19 (4223826-4224426)
               


               
               543-648, gnl|bosTau2|chr7 (15982686-15982791)
               

               
               543-648, gnl|Hg17|chr19 (4224414-4224551)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-524, gnl|bosTau2|chr7 (15982165-15982698)
               

               
               5-524, gnl|Hg17|chr19 (4223826-4224426)
               


               
               543-648, gnl|bosTau2|chr7 (15982686-15982791)
               

               
               543-648, gnl|Hg17|chr19 (4224414-4224551)

	5-524, gnl\|bosTau2\|chr7 (15982165-15982698)
	5-524, gnl\|Hg17\|chr19 (4223826-4224426)

	543-648, gnl\|bosTau2\|chr7 (15982686-15982791)
	543-648, gnl\|Hg17\|chr19 (4224414-4224551)