Non-Coding RNA Search

Ova1-OVRM10028F04

Sequence:


               
               AGTACCTTCCCGGCAGTCGCCAACAGTAAATGCAGCAGCAGCAGCAGCAGCAGCAGTTAG
CACTGATGCAACCACTGAGGCTATTGCCACCGCCTTCCCCCTAACGGGGCTTACAGCCCG
GGCGGGGGGGTGGGGGACTTGCAGCTTTCAGGGGCAACAAGCATCTCTCTACCACCCTCT
CCTGCGCCCCAAAGAACGGCTGCTATTATGAGGCTGGCCCCACAAAGGACTGTCATATGA
ACCTGAGGGGGTCACAGAAAACAAACAAAGGACTCTAATGTTTAGCCAAAGGATACCACA
AGAGGTGCAAGACTCAATGAACAGGGCCAGAGACCAGCTGTGCATGGCCAGCCTCTGCTT
TAGGCCCAAGAAGGAAAGAGATTCACAGGAGATAGTGAATCTCAGACTCTTCCTCAGTTA
CCAGCAGGAGGATTCTAGAGGGCTACcccgcagcataccgaagttcccaggctaggggtc
aaatcggagctgaagccagcctacaccacagccataacaacatgggatccaagccgagtc
tgaagcatactccacagctcatggcaacactggaaccttaacccactgagtgaagccagg
gattgaacttgcatcctcatggatgtcagtcggattcatttctgctgagccacgacaaga
actccATACTGTGACTCCTTGACTTCTTGGGTCACAGGCCATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTACCTTCCCGGCAGTCGCCAACAGTAAATGCAGCAGCAGCAGCAGCAGCAGCAGTTAG
CACTGATGCAACCACTGAGGCTATTGCCACCGCCTTCCCCCTAACGGGGCTTACAGCCCG
GGCGGGGGGGTGGGGGACTTGCAGCTTTCAGGGGCAACAAGCATCTCTCTACCACCCTCT
CCTGCGCCCCAAAGAACGGCTGCTATTATGAGGCTGGCCCCACAAAGGACTGTCATATGA
ACCTGAGGGGGTCACAGAAAACAAACAAAGGACTCTAATGTTTAGCCAAAGGATACCACA
AGAGGTGCAAGACTCAATGAACAGGGCCAGAGACCAGCTGTGCATGGCCAGCCTCTGCTT
TAGGCCCAAGAAGGAAAGAGATTCACAGGAGATAGTGAATCTCAGACTCTTCCTCAGTTA
CCAGCAGGAGGATTCTAGAGGGCTACcccgcagcataccgaagttcccaggctaggggtc
aaatcggagctgaagccagcctacaccacagccataacaacatgggatccaagccgagtc
tgaagcatactccacagctcatggcaacactggaaccttaacccactgagtgaagccagg
gattgaacttgcatcctcatggatgtcagtcggattcatttctgctgagccacgacaaga
actccATACTGTGACTCCTTGACTTCTTGGGTCACAGGCCATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               2-119, - strand, RNAz p=0.79552

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-119, - strand, RNAz p=0.79552

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               2-217, gnl|bosTau2|chr8 (17192924-17193122)
               

               
               2-217, gnl|canFam2|chr1 (94307226-94307978)
               

               
               2-217, gnl|dasNov1|scaffold_129652 (508-1254)
               

               
               2-217, gnl|hg17|chr9 (2611011-2611711)
               

               
               2-217, gnl|Hg17|chr9 (2611409-2611228)
               

               
               2-217, gnl|mm7|chr19 (26916493-26917165)
               

               
               2-217, gnl|Mm7|chr19 (26916882-26916719)
               

               
               2-217, gnl|monDom2|scaffold_17 (25090621-25091344)
               

               
               2-217, gnl|oryCun1|scaffold_199452 (19881-19260)
               

               
               2-217, gnl|panTro1|chr11 (2573309-2574002)
               

               
               2-217, gnl|rheMac2|chr15 (74620227-74619509)
               

               
               2-217, gnl|rn3|chr1 (230829778-230830467)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-217, gnl|bosTau2|chr8 (17192924-17193122)
               

               
               2-217, gnl|canFam2|chr1 (94307226-94307978)
               

               
               2-217, gnl|dasNov1|scaffold_129652 (508-1254)
               

               
               2-217, gnl|hg17|chr9 (2611011-2611711)
               

               
               2-217, gnl|Hg17|chr9 (2611409-2611228)
               

               
               2-217, gnl|mm7|chr19 (26916493-26917165)
               

               
               2-217, gnl|Mm7|chr19 (26916882-26916719)
               

               
               2-217, gnl|monDom2|scaffold_17 (25090621-25091344)
               

               
               2-217, gnl|oryCun1|scaffold_199452 (19881-19260)
               

               
               2-217, gnl|panTro1|chr11 (2573309-2574002)
               

               
               2-217, gnl|rheMac2|chr15 (74620227-74619509)
               

               
               2-217, gnl|rn3|chr1 (230829778-230830467)

	2-217, gnl\|bosTau2\|chr8 (17192924-17193122)
	2-217, gnl\|canFam2\|chr1 (94307226-94307978)
	2-217, gnl\|dasNov1\|scaffold_129652 (508-1254)
	2-217, gnl\|hg17\|chr9 (2611011-2611711)
	2-217, gnl\|Hg17\|chr9 (2611409-2611228)
	2-217, gnl\|mm7\|chr19 (26916493-26917165)
	2-217, gnl\|Mm7\|chr19 (26916882-26916719)
	2-217, gnl\|monDom2\|scaffold_17 (25090621-25091344)
	2-217, gnl\|oryCun1\|scaffold_199452 (19881-19260)
	2-217, gnl\|panTro1\|chr11 (2573309-2574002)
	2-217, gnl\|rheMac2\|chr15 (74620227-74619509)
	2-217, gnl\|rn3\|chr1 (230829778-230830467)