Ova1-OVRM10033C11
|
ATGCAGGTAGCAATGCACTGAAAAGAAACTAAGGGGTGATTTTGATAGTGATGAAGAAAG
TTTAGGTTACAACCTAGACAGTGATGAGGAAGAGGAAACATTAAAATCACTGGAAGAAAT
AATGGCTTTGAACTTCAATCAGACTCCTGCAACTACAGGAAAGCCTCCTGCTCTTTCTAA
GGAGCTTAGATCTCAGTCATCAGACTATACAGAACATGTTCATAGTGGAACTTACACAAA
CACTTTAGAGCGTCTAGTGAAGGAGATGGAAGACACACAAAGGCTAGATGAACTGCAGAA
GCAACTGCAGGAAGACATAAGGCAGGGCCGGGGCATTAAATCCCCAATCAGATTTGGTGA
TCAAGACAGTACAGATGATGAAGATGGCCTTTTAGAAGAGCACAGAGAATTTCTAAAGAA
ATTTTCAGTTACAATTGATGCTATTCCTGATCACCATCCAGGGGAAGAAATATTTAATTT
CCTTAATTCTGGGAAAATTTTCAATCAGTATACCTTGGATTTAAGAGACTCTGGTTTTAT
CGGACAAAGTGCTGTAGAAAAGCTTATTCTCAAATCAGGAAAAACA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATGCAGGTAGCAATGCACTGAAAAGAAACTAAGGGGTGATTTTGATAGTGATGAAGAAAG
TTTAGGTTACAACCTAGACAGTGATGAGGAAGAGGAAACATTAAAATCACTGGAAGAAAT
AATGGCTTTGAACTTCAATCAGACTCCTGCAACTACAGGAAAGCCTCCTGCTCTTTCTAA
GGAGCTTAGATCTCAGTCATCAGACTATACAGAACATGTTCATAGTGGAACTTACACAAA
CACTTTAGAGCGTCTAGTGAAGGAGATGGAAGACACACAAAGGCTAGATGAACTGCAGAA
GCAACTGCAGGAAGACATAAGGCAGGGCCGGGGCATTAAATCCCCAATCAGATTTGGTGA
TCAAGACAGTACAGATGATGAAGATGGCCTTTTAGAAGAGCACAGAGAATTTCTAAAGAA
ATTTTCAGTTACAATTGATGCTATTCCTGATCACCATCCAGGGGAAGAAATATTTAATTT
CCTTAATTCTGGGAAAATTTTCAATCAGTATACCTTGGATTTAAGAGACTCTGGTTTTAT
CGGACAAAGTGCTGTAGAAAAGCTTATTCTCAAATCAGGAAAAACA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-118, BP148450 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP148450.1|), blast E-value=0, identity=100% |
|
26-118, DB091068 TESTI4 Homo sapiens cDNA clone TESTI4040276 5', mRNA
(dbj|DB091068.1|), blast E-value=9.99967e-42, identity=98.92% |
|
1-118, RC3-HT0974-201100-021-b01 HT0974 Homo sapiens cDNA, mRNA sequence
(gb|BF837289.1|), blast E-value=0, identity=96.64% |
|
1-118, UI-M-HO0-cqc-a-13-0-UI.r1 NIH_BMAP_HO0 Mus musculus cDNA clone
(gb|CN534129.1|), blast E-value=2e-40, identity=94.12% |
|
1-118, LIB3550-030-P1-K1-H2 LIB3550 Canis familiaris cDNA clone
(gb|DN343333.1|), blast E-value=0, identity=99.16% |
|
1-118, 1456598 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT886958.1|),
blast E-value=0, identity=96.64% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
1-118, BP148450 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP148450.1|), blast E-value=0, identity=100% |
|
26-118, DB091068 TESTI4 Homo sapiens cDNA clone TESTI4040276 5', mRNA
(dbj|DB091068.1|), blast E-value=9.99967e-42, identity=98.92% |
|
1-118, RC3-HT0974-201100-021-b01 HT0974 Homo sapiens cDNA, mRNA sequence
(gb|BF837289.1|), blast E-value=0, identity=96.64% |
|
1-118, UI-M-HO0-cqc-a-13-0-UI.r1 NIH_BMAP_HO0 Mus musculus cDNA clone
(gb|CN534129.1|), blast E-value=2e-40, identity=94.12% |
|
1-118, LIB3550-030-P1-K1-H2 LIB3550 Canis familiaris cDNA clone
(gb|DN343333.1|), blast E-value=0, identity=99.16% |
|
1-118, 1456598 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT886958.1|),
blast E-value=0, identity=96.64% |
Human gene identifier and UTR site,
human gene reading direction
|
1-212, gnl|bosTau2|chr26 (13342014-13342226) |
|
1-212, gnl|Hg17|chr10 (102674508-102674720) |
|
1-212, gnl|Mm7|chr19 (44836088-44836300) |
| |
|
403-578, gnl|bosTau2|chr26 (13346692-13346867) |
|
403-578, gnl|canFam2|chr28 (16619335-16619559) |
|
403-578, gnl|dasNov1|scaffold_62064 (6194-5972) |
|
403-578, gnl|echTel1|scaffold_312078 (49082-48867) |
|
403-578, gnl|galGal2|chr6 (22192977-22192754) |
|
403-578, gnl|hg17|chr10 (102679576-102679797) |
|
403-578, gnl|Hg17|chr10 (102679574-102679749) |
|
403-578, gnl|loxAfr1|scaffold_10441 (38963-38747) |
|
403-578, gnl|mm7|chr19 (44842844-44843068) |
|
403-578, gnl|Mm7|chr19 (44842842-44843017) |
|
403-578, gnl|monDom2|scaffold_14 (62763785-62763571) |
|
403-578, gnl|oryCun1|scaffold_211698 (105305-105523) |
|
403-578, gnl|panTro1|chr8_random (3318008-3318229) |
|
403-578, gnl|rheMac2|chr9 (100540401-100540622) |
|
403-578, gnl|rn3|chr1 (250265899-250266122) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-212, gnl|bosTau2|chr26 (13342014-13342226) |
|
1-212, gnl|Hg17|chr10 (102674508-102674720) |
|
1-212, gnl|Mm7|chr19 (44836088-44836300) |
| |
|
403-578, gnl|bosTau2|chr26 (13346692-13346867) |
|
403-578, gnl|canFam2|chr28 (16619335-16619559) |
|
403-578, gnl|dasNov1|scaffold_62064 (6194-5972) |
|
403-578, gnl|echTel1|scaffold_312078 (49082-48867) |
|
403-578, gnl|galGal2|chr6 (22192977-22192754) |
|
403-578, gnl|hg17|chr10 (102679576-102679797) |
|
403-578, gnl|Hg17|chr10 (102679574-102679749) |
|
403-578, gnl|loxAfr1|scaffold_10441 (38963-38747) |
|
403-578, gnl|mm7|chr19 (44842844-44843068) |
|
403-578, gnl|Mm7|chr19 (44842842-44843017) |
|
403-578, gnl|monDom2|scaffold_14 (62763785-62763571) |
|
403-578, gnl|oryCun1|scaffold_211698 (105305-105523) |
|
403-578, gnl|panTro1|chr8_random (3318008-3318229) |
|
403-578, gnl|rheMac2|chr9 (100540401-100540622) |
|
403-578, gnl|rn3|chr1 (250265899-250266122) |
