Non-Coding RNA Search

Ova1-OVRM10036G04

Sequence:


               
               TAGCAAAAAGATAAAAGACAAAAAAAAAAAAAAAAAAAAGGCAAAACAGGCTGCAGTGCT
AGATGTGTGTTTCTGTGTTCCAGGTACATGTTCTGGGCCACCTCTATCTTTGCCATTTAC
TTATTACCTTTAATGGTGCTGCCTAGCCACTCTGTGACAGTGTTATTTTAACTTGAAATA
GCATGAGGGTGAGGAGAAAGTACCTTGTGAATGTGAAGGGGGAATTCTCCTGGGCACCCG
TAATTGCAGTGATTTGAAATGCTTTCACAGATTTGTAGGAGAGGGTAATTTTTCTTCTTT
ATTTGCTCCTTTTATCTTGTTCTAAAGCCAGTATTAGCCTCCCCTCCCACATAGACTTCT
TATTCCCTCCTTCCTTTCGCTGTCTTTTTTCTCCTTTAAAGAAACCCTTCCTATTAAAAA
TCAAAGGCATTTAAATTTTTTTTAAATTTTTTATAATGATGTGTATTTTTTCCAATATAG
CTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGCAAAAAGATAAAAGACAAAAAAAAAAAAAAAAAAAAGGCAAAACAGGCTGCAGTGCT
AGATGTGTGTTTCTGTGTTCCAGGTACATGTTCTGGGCCACCTCTATCTTTGCCATTTAC
TTATTACCTTTAATGGTGCTGCCTAGCCACTCTGTGACAGTGTTATTTTAACTTGAAATA
GCATGAGGGTGAGGAGAAAGTACCTTGTGAATGTGAAGGGGGAATTCTCCTGGGCACCCG
TAATTGCAGTGATTTGAAATGCTTTCACAGATTTGTAGGAGAGGGTAATTTTTCTTCTTT
ATTTGCTCCTTTTATCTTGTTCTAAAGCCAGTATTAGCCTCCCCTCCCACATAGACTTCT
TATTCCCTCCTTCCTTTCGCTGTCTTTTTTCTCCTTTAAAGAAACCCTTCCTATTAAAAA
TCAAAGGCATTTAAATTTTTTTTAAATTTTTTATAATGATGTGTATTTTTTCCAATATAG
CTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               190-305, + strand, RNAz p=0.789032
               

               
               265-380, - strand, RNAz p=0.698467

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               190-305, + strand, RNAz p=0.789032
               

               
               265-380, - strand, RNAz p=0.698467

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               44-452, gnl|bosTau2|chr25 (27246551-27246141)
               

               
               44-452, gnl|canFam2|chr6 (6818245-6817956)
               

               
               44-452, gnl|dasNov1|scaffold_21562 (33429-33160)
               

               
               44-452, gnl|hg17|chr7 (68571399-68571668)
               

               
               44-452, gnl|Hg17|chr7 (68571405-68571829)
               

               
               44-452, gnl|loxAfr1|scaffold_8690 (47454-47721)
               

               
               44-452, gnl|mm7|chr5 (131720471-131720195)
               

               
               44-452, gnl|Mm7|chr5 (131720463-131720015)
               

               
               44-452, gnl|oryCun1|scaffold_174279 (6973-6716)
               

               
               44-452, gnl|panTro1|chr6 (70403338-70403607)
               

               
               44-452, gnl|rheMac2|chr3 (54852684-54852953)
               

               
               44-452, gnl|rn3|chr12 (25205988-25205729)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-452, gnl|bosTau2|chr25 (27246551-27246141)
               

               
               44-452, gnl|canFam2|chr6 (6818245-6817956)
               

               
               44-452, gnl|dasNov1|scaffold_21562 (33429-33160)
               

               
               44-452, gnl|hg17|chr7 (68571399-68571668)
               

               
               44-452, gnl|Hg17|chr7 (68571405-68571829)
               

               
               44-452, gnl|loxAfr1|scaffold_8690 (47454-47721)
               

               
               44-452, gnl|mm7|chr5 (131720471-131720195)
               

               
               44-452, gnl|Mm7|chr5 (131720463-131720015)
               

               
               44-452, gnl|oryCun1|scaffold_174279 (6973-6716)
               

               
               44-452, gnl|panTro1|chr6 (70403338-70403607)
               

               
               44-452, gnl|rheMac2|chr3 (54852684-54852953)
               

               
               44-452, gnl|rn3|chr12 (25205988-25205729)

	190-305, + strand, RNAz p=0.789032
	265-380, - strand, RNAz p=0.698467

	44-452, gnl\|bosTau2\|chr25 (27246551-27246141)
	44-452, gnl\|canFam2\|chr6 (6818245-6817956)
	44-452, gnl\|dasNov1\|scaffold_21562 (33429-33160)
	44-452, gnl\|hg17\|chr7 (68571399-68571668)
	44-452, gnl\|Hg17\|chr7 (68571405-68571829)
	44-452, gnl\|loxAfr1\|scaffold_8690 (47454-47721)
	44-452, gnl\|mm7\|chr5 (131720471-131720195)
	44-452, gnl\|Mm7\|chr5 (131720463-131720015)
	44-452, gnl\|oryCun1\|scaffold_174279 (6973-6716)
	44-452, gnl\|panTro1\|chr6 (70403338-70403607)
	44-452, gnl\|rheMac2\|chr3 (54852684-54852953)
	44-452, gnl\|rn3\|chr12 (25205988-25205729)