Non-Coding RNA Search

Ova1-OVRM10038G08

Sequence:


               
               TGGttatagatgaggaaattgaggctcagagaggttaagtaactttttcaaagtaacaca
gctTTTTAGCATAGAGACTCAAATCTTCTAAGCGACTATGTCATCAGACTGTCTCCCTGT
TGAGCTTGGCCTTCCCCCAACATCTGCAGCTCAACTTGCCTCATTTTTTCCACGTCTCAT
TGCAAGCAGGCAGCCCCACAGAGTGACAAAATCCCTGTGAAAATGCCCCAATTGTGTCTG
GAGGTGTAGGAGGTGTATAGGAAATGCATACACAGTCCTTTATTTGCAATTCCCAAACTT
CCAGATCTGTGAAAACTGCATTTTATTCTTaacccatttggtggcaaaacttgatcccga
ctaatgtgaggctatttataaatccttgtttaacctacttagttaaaatatttatttgtt
ttgctgcagaaacattaatccatataattatggagagttgccctgactgctgcaggtgtt
atataatatacggtttaggcaacatactgtttttctaaaatataaaaaattctgaattct
gacgcttatcaggccccaTAGATTCCTGATATGTGGTTGTGAACCCATGTTAATGCTTTC
CTAAAGCATTTGAAACTGTGCCTAAAAAAAAAAATTTTTTTTTTTCCTAGTAACTATAAT
TTCTTTAAGAATCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGttatagatgaggaaattgaggctcagagaggttaagtaactttttcaaagtaacaca
gctTTTTAGCATAGAGACTCAAATCTTCTAAGCGACTATGTCATCAGACTGTCTCCCTGT
TGAGCTTGGCCTTCCCCCAACATCTGCAGCTCAACTTGCCTCATTTTTTCCACGTCTCAT
TGCAAGCAGGCAGCCCCACAGAGTGACAAAATCCCTGTGAAAATGCCCCAATTGTGTCTG
GAGGTGTAGGAGGTGTATAGGAAATGCATACACAGTCCTTTATTTGCAATTCCCAAACTT
CCAGATCTGTGAAAACTGCATTTTATTCTTaacccatttggtggcaaaacttgatcccga
ctaatgtgaggctatttataaatccttgtttaacctacttagttaaaatatttatttgtt
ttgctgcagaaacattaatccatataattatggagagttgccctgactgctgcaggtgtt
atataatatacggtttaggcaacatactgtttttctaaaatataaaaaattctgaattct
gacgcttatcaggccccaTAGATTCCTGATATGTGGTTGTGAACCCATGTTAATGCTTTC
CTAAAGCATTTGAAACTGTGCCTAAAAAAAAAAATTTTTTTTTTTCCTAGTAACTATAAT
TTCTTTAAGAATCTTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               414-531, - strand, RNAz p=0.979004

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               414-531, - strand, RNAz p=0.979004

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

Help | Less info


               
               4-549, gnl|bosTau2|chr1 (51459941-51459421)
               

               
               4-549, gnl|canFam2|chr34 (22496908-22497277)
               

               
               4-549, gnl|echTel1|scaffold_256949 (5280-4933)
               

               
               4-549, gnl|hg17|chr3 (188156471-188156837)
               

               
               4-549, gnl|loxAfr1|scaffold_30832 (30140-29771)
               

               
               4-549, gnl|mm7|chr16 (22906234-22906552)
               

               
               4-549, gnl|oryCun1|scaffold_207215 (127414-127069)
               

               
               4-549, gnl|panTro1|chr2 (192239321-192239689)
               

               
               4-549, gnl|rheMac2|chr2 (179296742-179297109)
               

               
               4-549, gnl|rn3|chr11 (79873247-79872942)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-549, gnl|bosTau2|chr1 (51459941-51459421)
               

               
               4-549, gnl|canFam2|chr34 (22496908-22497277)
               

               
               4-549, gnl|echTel1|scaffold_256949 (5280-4933)
               

               
               4-549, gnl|hg17|chr3 (188156471-188156837)
               

               
               4-549, gnl|loxAfr1|scaffold_30832 (30140-29771)
               

               
               4-549, gnl|mm7|chr16 (22906234-22906552)
               

               
               4-549, gnl|oryCun1|scaffold_207215 (127414-127069)
               

               
               4-549, gnl|panTro1|chr2 (192239321-192239689)
               

               
               4-549, gnl|rheMac2|chr2 (179296742-179297109)
               

               
               4-549, gnl|rn3|chr11 (79873247-79872942)

	4-549, gnl\|bosTau2\|chr1 (51459941-51459421)
	4-549, gnl\|canFam2\|chr34 (22496908-22497277)
	4-549, gnl\|echTel1\|scaffold_256949 (5280-4933)
	4-549, gnl\|hg17\|chr3 (188156471-188156837)
	4-549, gnl\|loxAfr1\|scaffold_30832 (30140-29771)
	4-549, gnl\|mm7\|chr16 (22906234-22906552)
	4-549, gnl\|oryCun1\|scaffold_207215 (127414-127069)
	4-549, gnl\|panTro1\|chr2 (192239321-192239689)
	4-549, gnl\|rheMac2\|chr2 (179296742-179297109)
	4-549, gnl\|rn3\|chr11 (79873247-79872942)