Non-Coding RNA Search

Ova1-OVRM10038H08

Sequence:


               
               TTTTAAAAAAGAAGAAGAAATATGCTATAGAAAGTTGATACAGAGCTGCTTCTGTCCTGG
GGAAAATGAAGTATTTGCCAGTTAGGAAAAGGTGGAAGTATACTTTTGGCAGATTCAGAA
TTGAAGAGTAAGAGTTGGAGGCCAAAGCCTGCCACTGTTGCTATTCCCGGTGAAATACCC
TCTCTACCAGGGTGAGACTCCAGAATGGCTGAACTGCAGGATTGTTAAACAAGCAGATCA
TCTGAAAAAACCTCAGCTCAGTCCTGTACTGCTGGGATAATCAAGTGTTTGGCAGGAGGA
AGATAATCACCCAAACCTTGAGTTATTTTTTCAGCCTTAGAAGATAATTTAGGCACACAT
CTTCATGTTTTCAGTTAAGGCAATATTTTAACCAAACCACATCATGCTTTTACTAAGCCA
CATTATGCTTTAACATAAAGAAAAATATTGATAAATTTGACTCCTGTAGAATTAGAAACT
TCTCTTTCATTGAAAGAGGAATAGTTTATCACCATTAATAAGAAAAATAAGGCAAAACCA
CAGATTAGAGAAGATATTTGCAGTATGAATCATTGATAAAGGGCTTACATTTAGAATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAAAAAGAAGAAGAAATATGCTATAGAAAGTTGATACAGAGCTGCTTCTGTCCTGG
GGAAAATGAAGTATTTGCCAGTTAGGAAAAGGTGGAAGTATACTTTTGGCAGATTCAGAA
TTGAAGAGTAAGAGTTGGAGGCCAAAGCCTGCCACTGTTGCTATTCCCGGTGAAATACCC
TCTCTACCAGGGTGAGACTCCAGAATGGCTGAACTGCAGGATTGTTAAACAAGCAGATCA
TCTGAAAAAACCTCAGCTCAGTCCTGTACTGCTGGGATAATCAAGTGTTTGGCAGGAGGA
AGATAATCACCCAAACCTTGAGTTATTTTTTCAGCCTTAGAAGATAATTTAGGCACACAT
CTTCATGTTTTCAGTTAAGGCAATATTTTAACCAAACCACATCATGCTTTTACTAAGCCA
CATTATGCTTTAACATAAAGAAAAATATTGATAAATTTGACTCCTGTAGAATTAGAAACT
TCTCTTTCATTGAAAGAGGAATAGTTTATCACCATTAATAAGAAAAATAAGGCAAAACCA
CAGATTAGAGAAGATATTTGCAGTATGAATCATTGATAAAGGGCTTACATTTAGAATATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               268-399, + strand, RNAz p=0.553191

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               268-399, + strand, RNAz p=0.553191

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               49-399, gnl|bosTau2|chr22 (8653604-8653246)
               

               
               49-399, gnl|Hg17|chr3 (38233006-38233380)
               


               
               408-600, gnl|bosTau2|chr22 (8653258-8653071)
               

               
               408-600, gnl|Hg17|chr3 (38233366-38233559)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-399, gnl|bosTau2|chr22 (8653604-8653246)
               

               
               49-399, gnl|Hg17|chr3 (38233006-38233380)
               


               
               408-600, gnl|bosTau2|chr22 (8653258-8653071)
               

               
               408-600, gnl|Hg17|chr3 (38233366-38233559)

	49-399, gnl\|bosTau2\|chr22 (8653604-8653246)
	49-399, gnl\|Hg17\|chr3 (38233006-38233380)

	408-600, gnl\|bosTau2\|chr22 (8653258-8653071)
	408-600, gnl\|Hg17\|chr3 (38233366-38233559)