Non-Coding RNA Search

Ova1-OVRM10041C05

Sequence:


               
               TTTTAAATCAGGACGTGGTAAAATCAATTCTAATTGTGCAGCATTTACATTCATTGCATT
AACTTGAGAAACTTCTGGCTCAGTGCAGCTCCCTGGGCCCGTGGTCTGGGCTACAGTGTC
CTGGGACGCCCCAGGGCCTGCCCTGGCAAAGGTGGCTGGGTCACAGCACAGGAAGACCCT
TTTAATGTGACTCCACCTAGAGACATTAGGCGGTAACAGTGGCTGTGATCCTTTGACGCG
TTCCGGCTGGGGTCCAAGCCTGCACCAGGATGGGAATGTGTGCAGCATTTAATAAGATGC
CTCCGTGAATCCCAAGAAAGCAGACACAAGAGCTTAGGAGAGAAACAAGGCCATCCCCAC
CACAAAGGAACCAGAAGCCTTCCAAATGTCAATGTGCTGCCACATTTTTTCCAAACTTGC
TGCCGGAGCGGCCTTTAACGTTCCCAAACCCTGCTGCGATCCACCAGCTACAAACCTCAA
TTGTTAATTGTCTGGCCACTACAGAGCCGCTCGTTTTAATATAGTCATGACATGAATGAG
ACCCGAGCTCCCCTTTGCCCCTCCCCTGAGGCACCTTGGATCTTGGAGGGAGACGGGGGC
ACAGAGTTGGCTCTGGTACAATAGGGGCTAGTGTTGATGTCGGCAATAAATCAAGGGTAA
CATTGTTTTCCCTGCTGGCAATCCACAAGCCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAAATCAGGACGTGGTAAAATCAATTCTAATTGTGCAGCATTTACATTCATTGCATT
AACTTGAGAAACTTCTGGCTCAGTGCAGCTCCCTGGGCCCGTGGTCTGGGCTACAGTGTC
CTGGGACGCCCCAGGGCCTGCCCTGGCAAAGGTGGCTGGGTCACAGCACAGGAAGACCCT
TTTAATGTGACTCCACCTAGAGACATTAGGCGGTAACAGTGGCTGTGATCCTTTGACGCG
TTCCGGCTGGGGTCCAAGCCTGCACCAGGATGGGAATGTGTGCAGCATTTAATAAGATGC
CTCCGTGAATCCCAAGAAAGCAGACACAAGAGCTTAGGAGAGAAACAAGGCCATCCCCAC
CACAAAGGAACCAGAAGCCTTCCAAATGTCAATGTGCTGCCACATTTTTTCCAAACTTGC
TGCCGGAGCGGCCTTTAACGTTCCCAAACCCTGCTGCGATCCACCAGCTACAAACCTCAA
TTGTTAATTGTCTGGCCACTACAGAGCCGCTCGTTTTAATATAGTCATGACATGAATGAG
ACCCGAGCTCCCCTTTGCCCCTCCCCTGAGGCACCTTGGATCTTGGAGGGAGACGGGGGC
ACAGAGTTGGCTCTGGTACAATAGGGGCTAGTGTTGATGTCGGCAATAAATCAAGGGTAA
CATTGTTTTCCCTGCTGGCAATCCACAAGCCTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               498-617, + strand, RNAz p=0.863419

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               498-617, + strand, RNAz p=0.863419

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-694, gnl|bosTau2|chr2 (54577460-54576777)
               

               
               1-694, gnl|Hg17|chr2 (206411588-206412289)
               

               
               1-694, gnl|Mm7|chr1 (62983683-62984344)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-694, gnl|bosTau2|chr2 (54577460-54576777)
               

               
               1-694, gnl|Hg17|chr2 (206411588-206412289)
               

               
               1-694, gnl|Mm7|chr1 (62983683-62984344)

	1-694, gnl\|bosTau2\|chr2 (54577460-54576777)
	1-694, gnl\|Hg17\|chr2 (206411588-206412289)
	1-694, gnl\|Mm7\|chr1 (62983683-62984344)