Non-Coding RNA Search

Ova1-OVRM10043G03

Sequence:


               
               CAAAAAAAAAAAAAAAATTCATTTAAGCACTAGTACCGGTGTTGGTAAAACCCAGTGGAG
GTTACAGGTAGCATCATTAGAACATAATTAACTAGGAATAGAAAAGCATTAGAAGGTGCT
CTGAGGGTATAAGCCCCCTGCTTGCCCATTGTGCCCGTGGGCCCAGTGTAACACCAGCCT
GAGAAGAGAATAGTCATCATGAAAATATTTTCTTTCCTTCCAAGTCAGGAAACAGACTCA
CAATGGAGTCTGCTTCTCCATTCTGAATTTTAAGATGTGCAGGAAACAACCAACCATTAC
TAGCTGAGGTTTTCCTGCTGATAAATGAACCCTGAGGCCACAGTGACCTGTCTTGTTAAT
GAGTTAATGAAGAATCTGGTCCTTGCATTGACCCTCTCCTTAAAAGCTTTCTGTGGAGCT
GAAACAGCATTCCTCTAATTTATGAGTTAACTCTTTCTTACTTAGCAAATGAGAAACAGA
AAGGGAGGAAAGAACCTGTGTGGCAGAGAAGTGGTTAGTCCACCAAGGGGCTTCAGTTTC
CAAATTTTTTTTTTTTAATTTGAATATTGAAGTTCCTGTTGTGGCTCAATGGGTAACAAA
CTCTACTAGTGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAAAAAAAAAAAAATTCATTTAAGCACTAGTACCGGTGTTGGTAAAACCCAGTGGAG
GTTACAGGTAGCATCATTAGAACATAATTAACTAGGAATAGAAAAGCATTAGAAGGTGCT
CTGAGGGTATAAGCCCCCTGCTTGCCCATTGTGCCCGTGGGCCCAGTGTAACACCAGCCT
GAGAAGAGAATAGTCATCATGAAAATATTTTCTTTCCTTCCAAGTCAGGAAACAGACTCA
CAATGGAGTCTGCTTCTCCATTCTGAATTTTAAGATGTGCAGGAAACAACCAACCATTAC
TAGCTGAGGTTTTCCTGCTGATAAATGAACCCTGAGGCCACAGTGACCTGTCTTGTTAAT
GAGTTAATGAAGAATCTGGTCCTTGCATTGACCCTCTCCTTAAAAGCTTTCTGTGGAGCT
GAAACAGCATTCCTCTAATTTATGAGTTAACTCTTTCTTACTTAGCAAATGAGAAACAGA
AAGGGAGGAAAGAACCTGTGTGGCAGAGAAGTGGTTAGTCCACCAAGGGGCTTCAGTTTC
CAAATTTTTTTTTTTTAATTTGAATATTGAAGTTCCTGTTGTGGCTCAATGGGTAACAAA
CTCTACTAGTGTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               169-328, - strand, RNAz p=0.998866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               169-328, - strand, RNAz p=0.998866

Similar Transcript(s): 2 entry(ies)

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Similar Transcript(s): 2 entry(ies)

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               169-328, BP460576 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP460576.1|), blast E-value=0, identity=100% 
               

               
               169-328, DB804529 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB804529.1|), blast E-value=0, identity=100%

Similar Transcript(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               169-328, BP460576 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP460576.1|), blast E-value=0, identity=100% 
               

               
               169-328, DB804529 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB804529.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               13-558, gnl|bosTau2|chrX (3275886-3276428)
               

               
               13-558, gnl|Hg17|chr16 (73932601-73932063)
               

               
               13-558, gnl|Mm7|chr8 (110401920-110401413)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-558, gnl|bosTau2|chrX (3275886-3276428)
               

               
               13-558, gnl|Hg17|chr16 (73932601-73932063)
               

               
               13-558, gnl|Mm7|chr8 (110401920-110401413)

	169-328, BP460576 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BP460576.1\|), blast E-value=0, identity=100%
	169-328, DB804529 full-length enriched swine cDNA library, adult skin Sus (dbj\|DB804529.1\|), blast E-value=0, identity=100%

	13-558, gnl\|bosTau2\|chrX (3275886-3276428)
	13-558, gnl\|Hg17\|chr16 (73932601-73932063)
	13-558, gnl\|Mm7\|chr8 (110401920-110401413)