Non-Coding RNA Search

Ova1-OVRM10044E09

Sequence:


               
               CTTTAGAAGCCTCACAGCTGTGGTCTCATTGTTAACTTTCAAAAAGACGGAGTCCTCAGC
GAGCTCACCACTTCCGTGGGAAGTTCCACCAGCGCTGTGGGGCGTGGACTGGAAATCCAG
AGAGCCTTCATCTCAAGCAGACACCTCGGTGGGCTTCTGCACAATGCTCAGAACAAACTG
GGGGCCGAGGGAGAGACTTCCTTTGTTACATACAGATGGGAACGGGCAATTCTGTGAATG
CAAACATACTTCCTGAGTTTTGCATTTGAGAAATGACTTAGAAAACTTCTTTTCCGGTTA
TTTTTATGTTGAATGTTCAAAGCCTTTTATGACTCCAGTCATCCTCCTTGGGTAGCTAGG
GGGACAAGTTTCCACAAAGCAAATGACTAATGACTACCTTTTCTTAGATAGATGTTTTTG
GTTTATCAAAGTTCTCTTTAATTTGCACTAGCACTGTGATAGTGTTCAATATGGACATGC
GGCAGAATGTCCGGTTTGCTAGATCACTTTCTGAGAAAGTGATACTAAGGTAGACTTGGC
TTTTTTTTTTTTTTTTTTTTTTTTTCCttttgccatttcttgggccactcccgcggcata
tggaagttcccag

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTAGAAGCCTCACAGCTGTGGTCTCATTGTTAACTTTCAAAAAGACGGAGTCCTCAGC
GAGCTCACCACTTCCGTGGGAAGTTCCACCAGCGCTGTGGGGCGTGGACTGGAAATCCAG
AGAGCCTTCATCTCAAGCAGACACCTCGGTGGGCTTCTGCACAATGCTCAGAACAAACTG
GGGGCCGAGGGAGAGACTTCCTTTGTTACATACAGATGGGAACGGGCAATTCTGTGAATG
CAAACATACTTCCTGAGTTTTGCATTTGAGAAATGACTTAGAAAACTTCTTTTCCGGTTA
TTTTTATGTTGAATGTTCAAAGCCTTTTATGACTCCAGTCATCCTCCTTGGGTAGCTAGG
GGGACAAGTTTCCACAAAGCAAATGACTAATGACTACCTTTTCTTAGATAGATGTTTTTG
GTTTATCAAAGTTCTCTTTAATTTGCACTAGCACTGTGATAGTGTTCAATATGGACATGC
GGCAGAATGTCCGGTTTGCTAGATCACTTTCTGAGAAAGTGATACTAAGGTAGACTTGGC
TTTTTTTTTTTTTTTTTTTTTTTTTCCttttgccatttcttgggccactcccgcggcata
tggaagttcccag

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               49-161, + strand, RNAz p=0.697484

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               49-161, + strand, RNAz p=0.697484

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_170773, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_170773, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               49-547, gnl|bosTau2|chr13 (31477265-31476782)
               

               
               49-547, gnl|Hg17|chr20 (4711208-4710728)
               

               
               49-547, gnl|Mm7|chr2 (131735683-131735207)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-547, gnl|bosTau2|chr13 (31477265-31476782)
               

               
               49-547, gnl|Hg17|chr20 (4711208-4710728)
               

               
               49-547, gnl|Mm7|chr2 (131735683-131735207)

	49-547, gnl\|bosTau2\|chr13 (31477265-31476782)
	49-547, gnl\|Hg17\|chr20 (4711208-4710728)
	49-547, gnl\|Mm7\|chr2 (131735683-131735207)