Non-Coding RNA Search

Ova1-OVRM10044H04

Sequence:


               
               ATGTTTTTTGTAAGGCCTCTGCTATATAAATAAGTTGAAGGGTCCATGTGAGGTGTAATG
ATTTATTGATGAGGATTTAGAACAAGGAAGGAAGCGATGCTTATATGTGTGTTTGTTATC
CAATCAGTGTTCGAGAAGGTTCTCAGACTCCCTCTCTTTCTATTCAGGTTTGGGAACCAT
CTCATCATTTTTTTTTTTTattgtcaggtgcatcattcctggccaaattctcatctccca
ccacaagaaaaaagtagcaatgctattattatttacagtgccatggctttctggaacctg
ttttataggaacagtataggtcttcttgtctcttcggttcTCTTCATACGTGCTGCTTAC
ATCATTACTCATGACACCATATTATCCTTATCTGTCATGCTGACCACAATTTATGTCTTC
CAGTGACTCACAAAGCTTATGACTGTGCTTTGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTTTTTTGTAAGGCCTCTGCTATATAAATAAGTTGAAGGGTCCATGTGAGGTGTAATG
ATTTATTGATGAGGATTTAGAACAAGGAAGGAAGCGATGCTTATATGTGTGTTTGTTATC
CAATCAGTGTTCGAGAAGGTTCTCAGACTCCCTCTCTTTCTATTCAGGTTTGGGAACCAT
CTCATCATTTTTTTTTTTTattgtcaggtgcatcattcctggccaaattctcatctccca
ccacaagaaaaaagtagcaatgctattattatttacagtgccatggctttctggaacctg
ttttataggaacagtataggtcttcttgtctcttcggttcTCTTCATACGTGCTGCTTAC
ATCATTACTCATGACACCATATTATCCTTATCTGTCATGCTGACCACAATTTATGTCTTC
CAGTGACTCACAAAGCTTATGACTGTGCTTTGTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               121-229, - strand, RNAz p=0.950629

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-229, - strand, RNAz p=0.950629

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               5-455, gnl|bosTau2|chr3 (71141830-71141366)
               

               
               5-455, gnl|canFam2|chr15 (19415025-19414865)
               

               
               5-455, gnl|hg17|chr1 (43966221-43966382)
               

               
               5-455, gnl|mm7|chr4 (117396709-117396572)
               

               
               5-455, gnl|oryCun1|scaffold_213615 (85163-85015)
               

               
               5-455, gnl|panTro1|chr1 (44955686-44955847)
               

               
               5-455, gnl|rheMac2|chr1 (46751029-46751192)
               

               
               5-455, gnl|rn3|chr5 (138487268-138487143)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-455, gnl|bosTau2|chr3 (71141830-71141366)
               

               
               5-455, gnl|canFam2|chr15 (19415025-19414865)
               

               
               5-455, gnl|hg17|chr1 (43966221-43966382)
               

               
               5-455, gnl|mm7|chr4 (117396709-117396572)
               

               
               5-455, gnl|oryCun1|scaffold_213615 (85163-85015)
               

               
               5-455, gnl|panTro1|chr1 (44955686-44955847)
               

               
               5-455, gnl|rheMac2|chr1 (46751029-46751192)
               

               
               5-455, gnl|rn3|chr5 (138487268-138487143)

	5-455, gnl\|bosTau2\|chr3 (71141830-71141366)
	5-455, gnl\|canFam2\|chr15 (19415025-19414865)
	5-455, gnl\|hg17\|chr1 (43966221-43966382)
	5-455, gnl\|mm7\|chr4 (117396709-117396572)
	5-455, gnl\|oryCun1\|scaffold_213615 (85163-85015)
	5-455, gnl\|panTro1\|chr1 (44955686-44955847)
	5-455, gnl\|rheMac2\|chr1 (46751029-46751192)
	5-455, gnl\|rn3\|chr5 (138487268-138487143)