Non-Coding RNA Search

Ova1-OVRM10046F08

Sequence:


               
               cgttgctgtggctctggcgtaggccggtggctacggctctgattcgacccctagcctggg
aacctccatatgccgcaggggtggcccaagaaatagcaaaaagacAAAAAAAAAAAAAAA
GTCAAAGCGGTTTTATGGGGAGGAAATCTGTTAGTGTTTAAAGGAACATATTTCCATAAT
CGCAAGAAGAATCAAAAGTGTAGAGTTCTTCTTTGGTTTTCTCACTCTGATCTTTGTACT
TGATTTTGACTCAGTAAGTACCAAAGATCTTATGGCTTCCAGGATTTCTCCAGCCACAGA
TCAGAATGCTGCTGAGAATTTCCGGGGAGGTCCTTCTTAAATGCAAAACATTAAAAATGT
TTTCTAGAAGACGTTTTCCCCGGTGTTCTCAGATTCAGATGGCCACCGGGGGAACGTGAT
GGGCTGAATAACCCCGGAGTGTAGCATTCCCCTCGGGGCCGTTGTAGGCAGTCAACTACA
AAGATGGCAGATCAAATGCAGCCTCTGCCATTGTTGAGGCTGGTGGTCCAGTGATCACAG
CCCCTCAATTACAGCCCTTCCAGGGAGCACGAGCAGCAGTCATTAAATCATTATGCCTTT
GATTAGTTGCTTTAACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               cgttgctgtggctctggcgtaggccggtggctacggctctgattcgacccctagcctggg
aacctccatatgccgcaggggtggcccaagaaatagcaaaaagacAAAAAAAAAAAAAAA
GTCAAAGCGGTTTTATGGGGAGGAAATCTGTTAGTGTTTAAAGGAACATATTTCCATAAT
CGCAAGAAGAATCAAAAGTGTAGAGTTCTTCTTTGGTTTTCTCACTCTGATCTTTGTACT
TGATTTTGACTCAGTAAGTACCAAAGATCTTATGGCTTCCAGGATTTCTCCAGCCACAGA
TCAGAATGCTGCTGAGAATTTCCGGGGAGGTCCTTCTTAAATGCAAAACATTAAAAATGT
TTTCTAGAAGACGTTTTCCCCGGTGTTCTCAGATTCAGATGGCCACCGGGGGAACGTGAT
GGGCTGAATAACCCCGGAGTGTAGCATTCCCCTCGGGGCCGTTGTAGGCAGTCAACTACA
AAGATGGCAGATCAAATGCAGCCTCTGCCATTGTTGAGGCTGGTGGTCCAGTGATCACAG
CCCCTCAATTACAGCCCTTCCAGGGAGCACGAGCAGCAGTCATTAAATCATTATGCCTTT
GATTAGTTGCTTTAACTGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-238, - strand, RNAz p=0.90989
               

               
               424-570, - strand, RNAz p=0.952698

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-238, - strand, RNAz p=0.90989
               

               
               424-570, - strand, RNAz p=0.952698

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               482-557, + strand, RNAmicro p=0.997469

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               482-557, + strand, RNAmicro p=0.997469

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               120-619, gnl|bosTau2|chr3 (82115703-82116197)
               

               
               120-619, gnl|Hg17|chr2 (236697686-236698200)
               

               
               120-619, gnl|Mm7|chr1 (89721510-89721976)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-619, gnl|bosTau2|chr3 (82115703-82116197)
               

               
               120-619, gnl|Hg17|chr2 (236697686-236698200)
               

               
               120-619, gnl|Mm7|chr1 (89721510-89721976)

	120-238, - strand, RNAz p=0.90989
	424-570, - strand, RNAz p=0.952698

	120-619, gnl\|bosTau2\|chr3 (82115703-82116197)
	120-619, gnl\|Hg17\|chr2 (236697686-236698200)
	120-619, gnl\|Mm7\|chr1 (89721510-89721976)