Non-Coding RNA Search

Ova1-OVRM10046G01

Sequence:


               
               AGCCTGGAGACGGGAGGCTCAGCCGGTGTTCGTTCGCAGGTCCCTGTGCTCAGCCTGCTC
CTGCTGCTCGGTTTCTGGGCCGCCTGAAATGACCAGCTTCTTATAAGATGGGAAACTCGT
ACGCCGGCCAGCTGAAGACCACGCGGTTCGAGGAGGTTTTGCACAGCTCCATCGAGGCCT
CCCTGCGCTCCAGCAGCCTGGTACCCAGGCCCGTCTTCTCCCAGTTGTACCTGGAAGCCG
AGCAGCAGCTCTCTGCCCTAGAAGGTGGCGGCCGAGTGGACAATGAGGAAGAGGAAGAGG
AGGGAGAAGGGGCTCTGGAACAGAGCTGTCCCCCAAATCCCTACCAGCTGCACCCCCCAC
CTGAAGGAAGCTGCACCACGGATGGGTTCTGCCAGGCGGGGAAGGACCTGCGTCTGGTCT
CCATCTCCAGCGAGGCCATCGACGTCCCCGTGGGCTTCCTCCTCGTGGGGGCCAAGTCCC
CCAGCCTGCCGGACCACCTCCTGGTGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTGGAGACGGGAGGCTCAGCCGGTGTTCGTTCGCAGGTCCCTGTGCTCAGCCTGCTC
CTGCTGCTCGGTTTCTGGGCCGCCTGAAATGACCAGCTTCTTATAAGATGGGAAACTCGT
ACGCCGGCCAGCTGAAGACCACGCGGTTCGAGGAGGTTTTGCACAGCTCCATCGAGGCCT
CCCTGCGCTCCAGCAGCCTGGTACCCAGGCCCGTCTTCTCCCAGTTGTACCTGGAAGCCG
AGCAGCAGCTCTCTGCCCTAGAAGGTGGCGGCCGAGTGGACAATGAGGAAGAGGAAGAGG
AGGGAGAAGGGGCTCTGGAACAGAGCTGTCCCCCAAATCCCTACCAGCTGCACCCCCCAC
CTGAAGGAAGCTGCACCACGGATGGGTTCTGCCAGGCGGGGAAGGACCTGCGTCTGGTCT
CCATCTCCAGCGAGGCCATCGACGTCCCCGTGGGCTTCCTCCTCGTGGGGGCCAAGTCCC
CCAGCCTGCCGGACCACCTCCTGGTGTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               384-502, + strand, RNAz p=0.715032

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               384-502, + strand, RNAz p=0.715032

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               388-493, + strand, RNAmicro p=0.994431

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               388-493, + strand, RNAmicro p=0.994431

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               99-266, gnl|bosTau2|chr11 (66105149-66105317)
               

               
               99-266, gnl|Hg17|chr2 (11647330-11647497)
               

               
               99-266, gnl|Mm7|chr12 (16794647-16794472)
               


               
               384-509, gnl|bosTau2|chr11 (66112115-66112240)
               

               
               384-509, gnl|canFam2|chr17 (11232201-11232412)
               

               
               384-509, gnl|danRer3|chr2 (4404595-4404803)
               

               
               384-509, gnl|echTel1|scaffold_283155 (96444-96664)
               

               
               384-509, gnl|fr1|chrUn (244133456-244133265)
               

               
               384-509, gnl|galGal2|chr3 (95594357-95594546)
               

               
               384-509, gnl|hg17|chr2 (11657182-11657402)
               

               
               384-509, gnl|Hg17|chr2 (11657203-11657328)
               

               
               384-509, gnl|loxAfr1|scaffold_111645 (110-330)
               

               
               384-509, gnl|mm7|chr12 (16788063-16787847)
               

               
               384-509, gnl|Mm7|chr12 (16788040-16787915)
               

               
               384-509, gnl|monDom2|scaffold_1 (91651015-91651205)
               

               
               384-509, gnl|oryCun1|scaffold_104233 (8163-8379)
               

               
               384-509, gnl|panTro1|chr12 (12375480-12375700)
               

               
               384-509, gnl|rheMac2|chr13 (11636871-11637091)
               

               
               384-509, gnl|rn3|chr6 (40407591-40407375)
               

               
               384-509, gnl|tetNig1|chr15_random (1340711-1340918)
               

               
               384-509, gnl|xenTro1|scaffold_1042 (287333-287536)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-266, gnl|bosTau2|chr11 (66105149-66105317)
               

               
               99-266, gnl|Hg17|chr2 (11647330-11647497)
               

               
               99-266, gnl|Mm7|chr12 (16794647-16794472)
               


               
               384-509, gnl|bosTau2|chr11 (66112115-66112240)
               

               
               384-509, gnl|canFam2|chr17 (11232201-11232412)
               

               
               384-509, gnl|danRer3|chr2 (4404595-4404803)
               

               
               384-509, gnl|echTel1|scaffold_283155 (96444-96664)
               

               
               384-509, gnl|fr1|chrUn (244133456-244133265)
               

               
               384-509, gnl|galGal2|chr3 (95594357-95594546)
               

               
               384-509, gnl|hg17|chr2 (11657182-11657402)
               

               
               384-509, gnl|Hg17|chr2 (11657203-11657328)
               

               
               384-509, gnl|loxAfr1|scaffold_111645 (110-330)
               

               
               384-509, gnl|mm7|chr12 (16788063-16787847)
               

               
               384-509, gnl|Mm7|chr12 (16788040-16787915)
               

               
               384-509, gnl|monDom2|scaffold_1 (91651015-91651205)
               

               
               384-509, gnl|oryCun1|scaffold_104233 (8163-8379)
               

               
               384-509, gnl|panTro1|chr12 (12375480-12375700)
               

               
               384-509, gnl|rheMac2|chr13 (11636871-11637091)
               

               
               384-509, gnl|rn3|chr6 (40407591-40407375)
               

               
               384-509, gnl|tetNig1|chr15_random (1340711-1340918)
               

               
               384-509, gnl|xenTro1|scaffold_1042 (287333-287536)

	99-266, gnl\|bosTau2\|chr11 (66105149-66105317)
	99-266, gnl\|Hg17\|chr2 (11647330-11647497)
	99-266, gnl\|Mm7\|chr12 (16794647-16794472)

	384-509, gnl\|bosTau2\|chr11 (66112115-66112240)
	384-509, gnl\|canFam2\|chr17 (11232201-11232412)
	384-509, gnl\|danRer3\|chr2 (4404595-4404803)
	384-509, gnl\|echTel1\|scaffold_283155 (96444-96664)
	384-509, gnl\|fr1\|chrUn (244133456-244133265)
	384-509, gnl\|galGal2\|chr3 (95594357-95594546)
	384-509, gnl\|hg17\|chr2 (11657182-11657402)
	384-509, gnl\|Hg17\|chr2 (11657203-11657328)
	384-509, gnl\|loxAfr1\|scaffold_111645 (110-330)
	384-509, gnl\|mm7\|chr12 (16788063-16787847)
	384-509, gnl\|Mm7\|chr12 (16788040-16787915)
	384-509, gnl\|monDom2\|scaffold_1 (91651015-91651205)
	384-509, gnl\|oryCun1\|scaffold_104233 (8163-8379)
	384-509, gnl\|panTro1\|chr12 (12375480-12375700)
	384-509, gnl\|rheMac2\|chr13 (11636871-11637091)
	384-509, gnl\|rn3\|chr6 (40407591-40407375)
	384-509, gnl\|tetNig1\|chr15_random (1340711-1340918)
	384-509, gnl\|xenTro1\|scaffold_1042 (287333-287536)