Non-Coding RNA Search

Ova1-OVRM10049G06

Sequence:


               
               ACTTCTAGGGGCTGTGCCGCCAGGCGAAGACACAACTCCACGGCCTCCGGCGCTAGCGCG
GTTGCGGGTGTGCGTTTCCCGAGTGCGTTCCCACCCCTCGCCCCAGGCTGTGATGCGCCT
GGAGGTCCCTTCAGATTCCAAATTCTGAGATTCGTCTCCAGAGCCAAGAGCACCGGCGGA
GGATGCCGTACAACTACTTAATTCCTACGCGGGCTGCGTGCGGAGCGCGGCTCTTGCGAC
CTCTCTGAGAGTGAGGACTCCCCCCTTCACCACCACTGGGTCTCCTCGGCTTTGCAAACC
CTGGTTCAATCAGGTATAACAGGGCAGCCCCCGCCCCTGGGCTTCGGGATCTCCCCGCTC
CACTCTCTCTGGCCAACAAGGACCGACTCAGAGGAAACCTGAGCGGGACCTGCCTTCCCC
GGCCGCTGCCTGCGCCCGGGTCTTGGAGGGGAACCTCTGCGTGGCCTGCCGTTTACCTTC
CTGACCCTGGCCTTGGGGCTGTTTCCCTAGGCCTACGACGGCCTGGGCGAGCGGTGGGGC
AGCAGCCAAGGCCTTTTCCAGCACTGGCCTTGTCGCCAGTCCCCAAACAAGTGTGTTTTG
TGTGTGGGCGCGCCTGCGCGCGCTCGGGGCCGAGACGCTGCGCGTCCCCTGTACCGGAAC
CAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTCTAGGGGCTGTGCCGCCAGGCGAAGACACAACTCCACGGCCTCCGGCGCTAGCGCG
GTTGCGGGTGTGCGTTTCCCGAGTGCGTTCCCACCCCTCGCCCCAGGCTGTGATGCGCCT
GGAGGTCCCTTCAGATTCCAAATTCTGAGATTCGTCTCCAGAGCCAAGAGCACCGGCGGA
GGATGCCGTACAACTACTTAATTCCTACGCGGGCTGCGTGCGGAGCGCGGCTCTTGCGAC
CTCTCTGAGAGTGAGGACTCCCCCCTTCACCACCACTGGGTCTCCTCGGCTTTGCAAACC
CTGGTTCAATCAGGTATAACAGGGCAGCCCCCGCCCCTGGGCTTCGGGATCTCCCCGCTC
CACTCTCTCTGGCCAACAAGGACCGACTCAGAGGAAACCTGAGCGGGACCTGCCTTCCCC
GGCCGCTGCCTGCGCCCGGGTCTTGGAGGGGAACCTCTGCGTGGCCTGCCGTTTACCTTC
CTGACCCTGGCCTTGGGGCTGTTTCCCTAGGCCTACGACGGCCTGGGCGAGCGGTGGGGC
AGCAGCCAAGGCCTTTTCCAGCACTGGCCTTGTCGCCAGTCCCCAAACAAGTGTGTTTTG
TGTGTGGGCGCGCCTGCGCGCGCTCGGGGCCGAGACGCTGCGCGTCCCCTGTACCGGAAC
CAATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               478-665, - strand, RNAz p=0.990144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               478-665, - strand, RNAz p=0.990144

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               109-665, gnl|bosTau2|chr16 (18097894-18097325)
               

               
               109-665, gnl|canFam2|chr7 (41225458-41224973)
               

               
               109-665, gnl|echTel1|scaffold_308442 (43121-43596)
               

               
               109-665, gnl|galGal2|chr14 (19700461-19700837)
               

               
               109-665, gnl|hg17|chr1 (223232278-223232759)
               

               
               109-665, gnl|Hg17|chr1 (223232328-223232856)
               

               
               109-665, gnl|loxAfr1|scaffold_10735 (11408-10916)
               

               
               109-665, gnl|mm7|chr1 (180312005-180311583)
               

               
               109-665, gnl|Mm7|chr1 (180311948-180311465)
               

               
               109-665, gnl|oryCun1|scaffold_117014 (2038-1532)
               

               
               109-665, gnl|panTro1|chr1_random (47851954-47851473)
               

               
               109-665, gnl|rheMac2|chr1 (143625297-143624804)
               

               
               109-665, gnl|rn3|chr13 (96234657-96234245)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-665, gnl|bosTau2|chr16 (18097894-18097325)
               

               
               109-665, gnl|canFam2|chr7 (41225458-41224973)
               

               
               109-665, gnl|echTel1|scaffold_308442 (43121-43596)
               

               
               109-665, gnl|galGal2|chr14 (19700461-19700837)
               

               
               109-665, gnl|hg17|chr1 (223232278-223232759)
               

               
               109-665, gnl|Hg17|chr1 (223232328-223232856)
               

               
               109-665, gnl|loxAfr1|scaffold_10735 (11408-10916)
               

               
               109-665, gnl|mm7|chr1 (180312005-180311583)
               

               
               109-665, gnl|Mm7|chr1 (180311948-180311465)
               

               
               109-665, gnl|oryCun1|scaffold_117014 (2038-1532)
               

               
               109-665, gnl|panTro1|chr1_random (47851954-47851473)
               

               
               109-665, gnl|rheMac2|chr1 (143625297-143624804)
               

               
               109-665, gnl|rn3|chr13 (96234657-96234245)

	109-665, gnl\|bosTau2\|chr16 (18097894-18097325)
	109-665, gnl\|canFam2\|chr7 (41225458-41224973)
	109-665, gnl\|echTel1\|scaffold_308442 (43121-43596)
	109-665, gnl\|galGal2\|chr14 (19700461-19700837)
	109-665, gnl\|hg17\|chr1 (223232278-223232759)
	109-665, gnl\|Hg17\|chr1 (223232328-223232856)
	109-665, gnl\|loxAfr1\|scaffold_10735 (11408-10916)
	109-665, gnl\|mm7\|chr1 (180312005-180311583)
	109-665, gnl\|Mm7\|chr1 (180311948-180311465)
	109-665, gnl\|oryCun1\|scaffold_117014 (2038-1532)
	109-665, gnl\|panTro1\|chr1_random (47851954-47851473)
	109-665, gnl\|rheMac2\|chr1 (143625297-143624804)
	109-665, gnl\|rn3\|chr13 (96234657-96234245)