Non-Coding RNA Search

Ova1-OVRM10050F12

Sequence:


               
               TTACATTTGTCAGCCCTGCCAGTCCTCTTGTGATAACCATGTGGACTGGCCGTGGAAGGG
GTCATCCCTATTTAAGATGAGAACACTGAGGGGTTAAGTCGTTTTGGTCTGTGTCACACT
GCGAGCAGGTGGCTGGAAGCCAGCTCTTGCCACTCTCAGCACAAGCCCCTTGCCCTGCTG
CCTATGAAAACAGCAATGACTCAGTGTGGCCTCCTAAATTCTAAGGGTCTCCATCTCCCA
GTACTTCAGTCTGCAGTACTGGCTTCACAGAGAAGGGCATACTTGTCCTTGGCCCTTAGC
TGCTACAATTTGGCCAACTCTCTCCCTCAGTGCGTCACTTGTTTCTTCTCTGGCAGTCTC
AATCTCCGACGTGGAAACGGTGCGTGGGGGCCATGAGTCTGAGTTGCTGCGCAACCTGGC
AGAGGAGTTCCCCCTGGAGCAGGGCTTCACCATCGTCTTCCATGGCCGCCGCTCCAACCT
GGACCTGGTGGCCAACAGTGTTGAGGAGGCCCAGGTCTGGATGCAAGGGCTCCAGCTATT
GGTGGACTTTGTCACTAACATGGACCAACAGGAGCGGCTGGACCAATGGCTGAGTGATTG
GTTCCAGCGTGGAGACNAAAACCAGGATGGGCGGATGAGTTTCGGAGAAGTCCAGCGGTT
ACTGCACCTGATGAATGTGGAAATGGACCAAGAACATGCCTTCCAGCTTTTCCAGACAGC
AGACACATCCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACATTTGTCAGCCCTGCCAGTCCTCTTGTGATAACCATGTGGACTGGCCGTGGAAGGG
GTCATCCCTATTTAAGATGAGAACACTGAGGGGTTAAGTCGTTTTGGTCTGTGTCACACT
GCGAGCAGGTGGCTGGAAGCCAGCTCTTGCCACTCTCAGCACAAGCCCCTTGCCCTGCTG
CCTATGAAAACAGCAATGACTCAGTGTGGCCTCCTAAATTCTAAGGGTCTCCATCTCCCA
GTACTTCAGTCTGCAGTACTGGCTTCACAGAGAAGGGCATACTTGTCCTTGGCCCTTAGC
TGCTACAATTTGGCCAACTCTCTCCCTCAGTGCGTCACTTGTTTCTTCTCTGGCAGTCTC
AATCTCCGACGTGGAAACGGTGCGTGGGGGCCATGAGTCTGAGTTGCTGCGCAACCTGGC
AGAGGAGTTCCCCCTGGAGCAGGGCTTCACCATCGTCTTCCATGGCCGCCGCTCCAACCT
GGACCTGGTGGCCAACAGTGTTGAGGAGGCCCAGGTCTGGATGCAAGGGCTCCAGCTATT
GGTGGACTTTGTCACTAACATGGACCAACAGGAGCGGCTGGACCAATGGCTGAGTGATTG
GTTCCAGCGTGGAGACNAAAACCAGGATGGGCGGATGAGTTTCGGAGAAGTCCAGCGGTT
ACTGCACCTGATGAATGTGGAAATGGACCAAGAACATGCCTTCCAGCTTTTCCAGACAGC
AGACACATCCCAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|6272566|gb|AAF06105.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6272566|gb|AAF06105.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               434-593, + strand, RNAz p=0.894585

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               434-593, + strand, RNAz p=0.894585

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-245, gnl|bosTau2|chr2 (59506874-59506631)
               

               
               1-245, gnl|canFam2|chr37 (28227019-28227264)
               

               
               1-245, gnl|dasNov1|scaffold_15354 (2178-1950)
               

               
               1-245, gnl|hg17|chr2 (219308394-219308640)
               

               
               1-245, gnl|Hg17|chr2 (219308418-219308663)
               

               
               1-245, gnl|loxAfr1|scaffold_3459 (71596-71349)
               

               
               1-245, gnl|mm7|chr1 (74788474-74788689)
               

               
               1-245, gnl|Mm7|chr1 (74788482-74788711)
               

               
               1-245, gnl|oryCun1|scaffold_203163 (31449-31662)
               

               
               1-245, gnl|panTro1|chr13 (109468259-109468505)
               

               
               1-245, gnl|rheMac2|chr12 (82466040-82466286)
               

               
               1-245, gnl|rn3|chr9 (74031071-74031277)
               


               
               275-612, gnl|bosTau2|chr2 (59506563-59506226)
               

               
               275-612, gnl|Hg17|chr2 (219308725-219309061)
               

               
               275-612, gnl|Mm7|chr1 (74788767-74789102)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-245, gnl|bosTau2|chr2 (59506874-59506631)
               

               
               1-245, gnl|canFam2|chr37 (28227019-28227264)
               

               
               1-245, gnl|dasNov1|scaffold_15354 (2178-1950)
               

               
               1-245, gnl|hg17|chr2 (219308394-219308640)
               

               
               1-245, gnl|Hg17|chr2 (219308418-219308663)
               

               
               1-245, gnl|loxAfr1|scaffold_3459 (71596-71349)
               

               
               1-245, gnl|mm7|chr1 (74788474-74788689)
               

               
               1-245, gnl|Mm7|chr1 (74788482-74788711)
               

               
               1-245, gnl|oryCun1|scaffold_203163 (31449-31662)
               

               
               1-245, gnl|panTro1|chr13 (109468259-109468505)
               

               
               1-245, gnl|rheMac2|chr12 (82466040-82466286)
               

               
               1-245, gnl|rn3|chr9 (74031071-74031277)
               


               
               275-612, gnl|bosTau2|chr2 (59506563-59506226)
               

               
               275-612, gnl|Hg17|chr2 (219308725-219309061)
               

               
               275-612, gnl|Mm7|chr1 (74788767-74789102)

	1-245, gnl\|bosTau2\|chr2 (59506874-59506631)
	1-245, gnl\|canFam2\|chr37 (28227019-28227264)
	1-245, gnl\|dasNov1\|scaffold_15354 (2178-1950)
	1-245, gnl\|hg17\|chr2 (219308394-219308640)
	1-245, gnl\|Hg17\|chr2 (219308418-219308663)
	1-245, gnl\|loxAfr1\|scaffold_3459 (71596-71349)
	1-245, gnl\|mm7\|chr1 (74788474-74788689)
	1-245, gnl\|Mm7\|chr1 (74788482-74788711)
	1-245, gnl\|oryCun1\|scaffold_203163 (31449-31662)
	1-245, gnl\|panTro1\|chr13 (109468259-109468505)
	1-245, gnl\|rheMac2\|chr12 (82466040-82466286)
	1-245, gnl\|rn3\|chr9 (74031071-74031277)

	275-612, gnl\|bosTau2\|chr2 (59506563-59506226)
	275-612, gnl\|Hg17\|chr2 (219308725-219309061)
	275-612, gnl\|Mm7\|chr1 (74788767-74789102)