Non-Coding RNA Search

Ova1-OVRM10054C02

Sequence:


               
               TTTTTTTTTGATCCATACAGAGCATAAATCTTTTTATTTTCTATTTCATTTCAAGCGAAG
CACACATAAAAAGCATGCCATGGTTGAGGGCCTGCAGCCAGATGGCTTCCAGAGCTGGAT
TCGATCATACCACCCTATTCTAAACTTGCAGCTCATCCTCTTTTTCCACTCACTTCACAA
TTTGAGAACTGCTACAGTAGTGGTGAAGCTTTTTATAAATAAAGCCTAATCCAAAGGGTG
AGCTTAGAGTATTCCGCATCTGCCTCCCCTTAATGTGGGAAGATTTTGCTTAATTTGAAT
GATTTCGATGTGGGCATTGGTGTTGGCTTGCCACTCAACCTCAGCATGGGTAACCTGACA
TCCTATCTGATACTTTATGATGAGATGTTATATCATTTTTCTGCCCTCTCTCTGAACAAG
TATGCAATTGACACAGCTGAGGATTTGCTCACCTCTATTGTTTATACCAGGTTCTCAAAT
ACTCCAGCTCATCAGTCATGGTTTTGTTTGCATGTTTGTGTCGGAGGACTAAGTTGGCCC
CAAATAGTGAAATGCTCTCAGCAGTATATTCATGAGATGAGTGTTTGTTCTTGCCTGACG
GACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTGATCCATACAGAGCATAAATCTTTTTATTTTCTATTTCATTTCAAGCGAAG
CACACATAAAAAGCATGCCATGGTTGAGGGCCTGCAGCCAGATGGCTTCCAGAGCTGGAT
TCGATCATACCACCCTATTCTAAACTTGCAGCTCATCCTCTTTTTCCACTCACTTCACAA
TTTGAGAACTGCTACAGTAGTGGTGAAGCTTTTTATAAATAAAGCCTAATCCAAAGGGTG
AGCTTAGAGTATTCCGCATCTGCCTCCCCTTAATGTGGGAAGATTTTGCTTAATTTGAAT
GATTTCGATGTGGGCATTGGTGTTGGCTTGCCACTCAACCTCAGCATGGGTAACCTGACA
TCCTATCTGATACTTTATGATGAGATGTTATATCATTTTTCTGCCCTCTCTCTGAACAAG
TATGCAATTGACACAGCTGAGGATTTGCTCACCTCTATTGTTTATACCAGGTTCTCAAAT
ACTCCAGCTCATCAGTCATGGTTTTGTTTGCATGTTTGTGTCGGAGGACTAAGTTGGCCC
CAAATAGTGAAATGCTCTCAGCAGTATATTCATGAGATGAGTGTTTGTTCTTGCCTGACG
GACAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-118, - strand, RNAz p=0.912974

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.912974

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-598, gnl|bosTau2|chr2 (17176724-17176145)
               

               
               1-598, gnl|canFam2|chr36 (19842131-19842668)
               

               
               1-598, gnl|dasNov1|scaffold_7259 (49151-48602)
               

               
               1-598, gnl|echTel1|scaffold_306929 (5919-6476)
               

               
               1-598, gnl|galGal2|chr7 (18443953-18443404)
               

               
               1-598, gnl|hg17|chr2 (173163139-173163679)
               

               
               1-598, gnl|Hg17|chr2 (173163179-173163761)
               

               
               1-598, gnl|loxAfr1|scaffold_2760 (18029-18571)
               

               
               1-598, gnl|mm7|chr2 (71668163-71668687)
               

               
               1-598, gnl|Mm7|chr2 (71668211-71668762)
               

               
               1-598, gnl|monDom2|scaffold_2 (71452823-71453484)
               

               
               1-598, gnl|oryCun1|scaffold_212494 (78658-78103)
               

               
               1-598, gnl|panTro1|chr13 (62800404-62800944)
               

               
               1-598, gnl|rheMac2|chr12 (36122982-36123517)
               

               
               1-598, gnl|rn3|chr3 (54140289-54140813)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-598, gnl|bosTau2|chr2 (17176724-17176145)
               

               
               1-598, gnl|canFam2|chr36 (19842131-19842668)
               

               
               1-598, gnl|dasNov1|scaffold_7259 (49151-48602)
               

               
               1-598, gnl|echTel1|scaffold_306929 (5919-6476)
               

               
               1-598, gnl|galGal2|chr7 (18443953-18443404)
               

               
               1-598, gnl|hg17|chr2 (173163139-173163679)
               

               
               1-598, gnl|Hg17|chr2 (173163179-173163761)
               

               
               1-598, gnl|loxAfr1|scaffold_2760 (18029-18571)
               

               
               1-598, gnl|mm7|chr2 (71668163-71668687)
               

               
               1-598, gnl|Mm7|chr2 (71668211-71668762)
               

               
               1-598, gnl|monDom2|scaffold_2 (71452823-71453484)
               

               
               1-598, gnl|oryCun1|scaffold_212494 (78658-78103)
               

               
               1-598, gnl|panTro1|chr13 (62800404-62800944)
               

               
               1-598, gnl|rheMac2|chr12 (36122982-36123517)
               

               
               1-598, gnl|rn3|chr3 (54140289-54140813)

	1-598, gnl\|bosTau2\|chr2 (17176724-17176145)
	1-598, gnl\|canFam2\|chr36 (19842131-19842668)
	1-598, gnl\|dasNov1\|scaffold_7259 (49151-48602)
	1-598, gnl\|echTel1\|scaffold_306929 (5919-6476)
	1-598, gnl\|galGal2\|chr7 (18443953-18443404)
	1-598, gnl\|hg17\|chr2 (173163139-173163679)
	1-598, gnl\|Hg17\|chr2 (173163179-173163761)
	1-598, gnl\|loxAfr1\|scaffold_2760 (18029-18571)
	1-598, gnl\|mm7\|chr2 (71668163-71668687)
	1-598, gnl\|Mm7\|chr2 (71668211-71668762)
	1-598, gnl\|monDom2\|scaffold_2 (71452823-71453484)
	1-598, gnl\|oryCun1\|scaffold_212494 (78658-78103)
	1-598, gnl\|panTro1\|chr13 (62800404-62800944)
	1-598, gnl\|rheMac2\|chr12 (36122982-36123517)
	1-598, gnl\|rn3\|chr3 (54140289-54140813)