Non-Coding RNA Search

Ova1-OVRM10054G08

Sequence:


               
               AGTAGGGAAACCCTCGGCCGGCCGAGCCTGCTCCGGCCGCGAGAGGCGGGCTCCAGCCGC
GGTTTGCGCGCTCGCTCTGAGCCCCCGCGCCCAGGTAGGATGGAAGAAGCCTGTCAGGTA
AGCGTGGTACCCAATATTTGTAGCATCAACATTTTGGTGCATGGAAACATAAAGTTGGGA
GGAAAAAAAATAAAGCACAATCTAGCGTACAACCTAGCACTTTGCATCGTCTGCCACTTT
GTTGCAAATTATTTCCCTGGATTTTAGGTGAAAGGTAAAATTTGGTTCAAAGTCACCAGC
TGCCCCTTTGCTGTCCCAGAAACGTAGGTTACTCAGCGGAGACAACAGACAAGACAGGAT
CCGTGTGCAGCTGCAAAATCTATTCTGGGTACCACAGCGGGTATACAGGAGACTTTTCTT
TCCCCAAGGACACCTCTCGTTCAGAGGTATTAGCTGGAGCCTTAATCCTAAATTTGACTC
TTAAGAATGACAGGATGACGTCTGCCAATTGCGCTGCCAAAAGATGAAGCCTGCAGAAGG
CCAGTTATGAATCAAGTGAGGGAGCTGATGTATTCCTAGTGATGATGGTGCCCATTTTTA
CCAAATTCACTGTTCCTTTTATATGAATTCTGGGGCAGATTTCCATCCTGTCATGGACCT
GATATTATTCATCTTGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAGGGAAACCCTCGGCCGGCCGAGCCTGCTCCGGCCGCGAGAGGCGGGCTCCAGCCGC
GGTTTGCGCGCTCGCTCTGAGCCCCCGCGCCCAGGTAGGATGGAAGAAGCCTGTCAGGTA
AGCGTGGTACCCAATATTTGTAGCATCAACATTTTGGTGCATGGAAACATAAAGTTGGGA
GGAAAAAAAATAAAGCACAATCTAGCGTACAACCTAGCACTTTGCATCGTCTGCCACTTT
GTTGCAAATTATTTCCCTGGATTTTAGGTGAAAGGTAAAATTTGGTTCAAAGTCACCAGC
TGCCCCTTTGCTGTCCCAGAAACGTAGGTTACTCAGCGGAGACAACAGACAAGACAGGAT
CCGTGTGCAGCTGCAAAATCTATTCTGGGTACCACAGCGGGTATACAGGAGACTTTTCTT
TCCCCAAGGACACCTCTCGTTCAGAGGTATTAGCTGGAGCCTTAATCCTAAATTTGACTC
TTAAGAATGACAGGATGACGTCTGCCAATTGCGCTGCCAAAAGATGAAGCCTGCAGAAGG
CCAGTTATGAATCAAGTGAGGGAGCTGATGTATTCCTAGTGATGATGGTGCCCATTTTTA
CCAAATTCACTGTTCCTTTTATATGAATTCTGGGGCAGATTTCCATCCTGTCATGGACCT
GATATTATTCATCTTGGTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               80-226, + strand, RNAz p=0.841451

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-226, + strand, RNAz p=0.841451

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-678, gnl|bosTau2|chr2 (17656959-17657640)
               

               
               1-678, gnl|Hg17|chr2 (172690209-172689535)
               

               
               1-678, gnl|Mm7|chr2 (71296905-71296283)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-678, gnl|bosTau2|chr2 (17656959-17657640)
               

               
               1-678, gnl|Hg17|chr2 (172690209-172689535)
               

               
               1-678, gnl|Mm7|chr2 (71296905-71296283)

	1-678, gnl\|bosTau2\|chr2 (17656959-17657640)
	1-678, gnl\|Hg17\|chr2 (172690209-172689535)
	1-678, gnl\|Mm7\|chr2 (71296905-71296283)