Non-Coding RNA Search

Ova1-OVRM10056H03

Sequence:


               
               ACTAAGGGTTGGAGAAGGTAGTGGTAAGCGCCACCGTGGAGCTACTCCGAGATCCCCGGG
AGGCTCGCCGAGCTGCCCGCCTGACCGGGACGTCGCCCCCGCGGAAACCTCGGAGGCGGA
AGCGACGCCGGAGGCAGGCAAAGAAACAGGTGAAGAAACCAAAAAAAAAGGAAGTCAAGA
GGTCTTTCCCAAGGTCAAAGATCAAGGACACGGCCTCCTCAGGAGTCTACAAACTGGATG
ATGGGAAGCCTTACCTGAGCAACTGCTTTCCAGCCAAAAGTCTGCTTCGGATGCCAGAGG
AAGGCCGAGGACACTGGTTAGTGGCTCGGAAATGTGGCCCCAAGAAGAAGCCCAAGGCTG
TGGTTGCAGCACCAGCTGAAGGTCAGGAAAGCCGGAAGGTTTCTTTTGAGGTCGGAGGGA
AGAAGGGGTCTTGGCAGGAAAACCAAGTGGACGTTCCTGGACACGTGCTGGACCAGGCTT
TTCTGGTGAGAGTAAACGCGCCCTGGAAAGGCTGGCAGCACCAGCGTGCGACTGTCTTGG
TGGGGACAAGGACGTGCCCTGCTGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTAAGGGTTGGAGAAGGTAGTGGTAAGCGCCACCGTGGAGCTACTCCGAGATCCCCGGG
AGGCTCGCCGAGCTGCCCGCCTGACCGGGACGTCGCCCCCGCGGAAACCTCGGAGGCGGA
AGCGACGCCGGAGGCAGGCAAAGAAACAGGTGAAGAAACCAAAAAAAAAGGAAGTCAAGA
GGTCTTTCCCAAGGTCAAAGATCAAGGACACGGCCTCCTCAGGAGTCTACAAACTGGATG
ATGGGAAGCCTTACCTGAGCAACTGCTTTCCAGCCAAAAGTCTGCTTCGGATGCCAGAGG
AAGGCCGAGGACACTGGTTAGTGGCTCGGAAATGTGGCCCCAAGAAGAAGCCCAAGGCTG
TGGTTGCAGCACCAGCTGAAGGTCAGGAAAGCCGGAAGGTTTCTTTTGAGGTCGGAGGGA
AGAAGGGGTCTTGGCAGGAAAACCAAGTGGACGTTCCTGGACACGTGCTGGACCAGGCTT
TTCTGGTGAGAGTAAACGCGCCCTGGAAAGGCTGGCAGCACCAGCGTGCGACTGTCTTGG
TGGGGACAAGGACGTGCCCTGCTGCCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               381-497, + strand, RNAz p=0.714165

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               381-497, + strand, RNAz p=0.714165

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-138, gnl|bosTau2|chr8 (11648205-11648065)
               

               
               1-138, gnl|canFam2|chr21 (26515236-26515018)
               

               
               1-138, gnl|dasNov1|scaffold_159869 (2778-3000)
               

               
               1-138, gnl|echTel1|scaffold_319597 (3033-2816)
               

               
               1-138, gnl|hg17|chr11 (74337591-74337803)
               

               
               1-138, gnl|Hg17|chr11 (74337760-74337620)
               

               
               1-138, gnl|mm7|chr7 (95890064-95889843)
               

               
               1-138, gnl|Mm7|chr7 (95889884-95890028)
               

               
               1-138, gnl|monDom2|scaffold_74 (2213572-2213347)
               

               
               1-138, gnl|panTro1|chr9_random (35512203-35512416)
               

               
               1-138, gnl|rheMac2|chr14 (73116369-73116582)
               

               
               1-138, gnl|rn3|chr1 (157296191-157295970)
               


               
               302-568, gnl|bosTau2|chr8 (11632040-11631769)
               

               
               302-568, gnl|Hg17|chr11 (74325763-74325501)
               

               
               302-568, gnl|Mm7|chr7 (95902077-95902453)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-138, gnl|bosTau2|chr8 (11648205-11648065)
               

               
               1-138, gnl|canFam2|chr21 (26515236-26515018)
               

               
               1-138, gnl|dasNov1|scaffold_159869 (2778-3000)
               

               
               1-138, gnl|echTel1|scaffold_319597 (3033-2816)
               

               
               1-138, gnl|hg17|chr11 (74337591-74337803)
               

               
               1-138, gnl|Hg17|chr11 (74337760-74337620)
               

               
               1-138, gnl|mm7|chr7 (95890064-95889843)
               

               
               1-138, gnl|Mm7|chr7 (95889884-95890028)
               

               
               1-138, gnl|monDom2|scaffold_74 (2213572-2213347)
               

               
               1-138, gnl|panTro1|chr9_random (35512203-35512416)
               

               
               1-138, gnl|rheMac2|chr14 (73116369-73116582)
               

               
               1-138, gnl|rn3|chr1 (157296191-157295970)
               


               
               302-568, gnl|bosTau2|chr8 (11632040-11631769)
               

               
               302-568, gnl|Hg17|chr11 (74325763-74325501)
               

               
               302-568, gnl|Mm7|chr7 (95902077-95902453)

	1-138, gnl\|bosTau2\|chr8 (11648205-11648065)
	1-138, gnl\|canFam2\|chr21 (26515236-26515018)
	1-138, gnl\|dasNov1\|scaffold_159869 (2778-3000)
	1-138, gnl\|echTel1\|scaffold_319597 (3033-2816)
	1-138, gnl\|hg17\|chr11 (74337591-74337803)
	1-138, gnl\|Hg17\|chr11 (74337760-74337620)
	1-138, gnl\|mm7\|chr7 (95890064-95889843)
	1-138, gnl\|Mm7\|chr7 (95889884-95890028)
	1-138, gnl\|monDom2\|scaffold_74 (2213572-2213347)
	1-138, gnl\|panTro1\|chr9_random (35512203-35512416)
	1-138, gnl\|rheMac2\|chr14 (73116369-73116582)
	1-138, gnl\|rn3\|chr1 (157296191-157295970)

	302-568, gnl\|bosTau2\|chr8 (11632040-11631769)
	302-568, gnl\|Hg17\|chr11 (74325763-74325501)
	302-568, gnl\|Mm7\|chr7 (95902077-95902453)