Non-Coding RNA Search

Ova1-OVRM10058A04

Sequence:


               
               TGGCTGAACCACTGTTTTATGGAGAAACAATGAGTCCAAAATACAGCTTTTCAGAAAGTA
TGGGATGTACAATAACCACACTGTGTATCTGCTGTCACTCAAAGAGATAAGCCACGGGAC
AGAGTTCCCAGAGCCCCCTCCTTCCCCAAACCTGTCAGGTTCAGAGAGAGAGCTCAGAAA
AGAGGCAGTGCCTTGCTGCAGCAGCAGAGCCTTCAGGTAGACTTGAGGAAGGTCTTTTGA
GGGGGACTGAGGCATAATGAGATTTCTGATGCCCGGCATGGGCCCCTTGAGCTACAGGGA
GGCACTAGGGATGCAGGGGTTTGGGCCTGGAGGCAGGGCCTTTCAGAAGTCTCCTGTTGG
CCTCTGTCCCCTCCTGGGTCATCTACCTGCTGCTGTGTGTTTCTCCTCGAAGGGCCCAGC
TCCCCCAGGCTCCTACAAGCACAGTGATGTCCAGGGAGAGCAAAGCCCTTTGGAGATGCC
AGTGGCGAAGGGCAGAGGCGTCTAGGAAAGCTTGAGGGTTAGAAGTGGTGTCAGGGATCA
AGGGGCAAAAGGTAGAGTGTGTGCGTGGACGGGGCCTTGACTTGGTCTATGGCCTAGTCC
CTCGGGCCCCCAGCCCAAAGAGGCTCAGGTTTTGAAGCTCCCTCCCTGATCTTCCAGACC
TGGTGTCTGTCTTACCTTTGCACAGATGCTCTGTCCCACTCCTCTCTCTGAGTACACCTG
G

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTGAACCACTGTTTTATGGAGAAACAATGAGTCCAAAATACAGCTTTTCAGAAAGTA
TGGGATGTACAATAACCACACTGTGTATCTGCTGTCACTCAAAGAGATAAGCCACGGGAC
AGAGTTCCCAGAGCCCCCTCCTTCCCCAAACCTGTCAGGTTCAGAGAGAGAGCTCAGAAA
AGAGGCAGTGCCTTGCTGCAGCAGCAGAGCCTTCAGGTAGACTTGAGGAAGGTCTTTTGA
GGGGGACTGAGGCATAATGAGATTTCTGATGCCCGGCATGGGCCCCTTGAGCTACAGGGA
GGCACTAGGGATGCAGGGGTTTGGGCCTGGAGGCAGGGCCTTTCAGAAGTCTCCTGTTGG
CCTCTGTCCCCTCCTGGGTCATCTACCTGCTGCTGTGTGTTTCTCCTCGAAGGGCCCAGC
TCCCCCAGGCTCCTACAAGCACAGTGATGTCCAGGGAGAGCAAAGCCCTTTGGAGATGCC
AGTGGCGAAGGGCAGAGGCGTCTAGGAAAGCTTGAGGGTTAGAAGTGGTGTCAGGGATCA
AGGGGCAAAAGGTAGAGTGTGTGCGTGGACGGGGCCTTGACTTGGTCTATGGCCTAGTCC
CTCGGGCCCCCAGCCCAAAGAGGCTCAGGTTTTGAAGCTCCCTCCCTGATCTTCCAGACC
TGGTGTCTGTCTTACCTTTGCACAGATGCTCTGTCCCACTCCTCTCTCTGAGTACACCTG
G

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               380-498, + strand, RNAz p=0.886782

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               380-498, + strand, RNAz p=0.886782

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-721, gnl|bosTau2|chr27 (16646775-16646059)
               

               
               4-721, gnl|Hg17|chr1 (47366536-47365672)
               

               
               4-721, gnl|Mm7|chr4 (114466464-114467104)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-721, gnl|bosTau2|chr27 (16646775-16646059)
               

               
               4-721, gnl|Hg17|chr1 (47366536-47365672)
               

               
               4-721, gnl|Mm7|chr4 (114466464-114467104)

	4-721, gnl\|bosTau2\|chr27 (16646775-16646059)
	4-721, gnl\|Hg17\|chr1 (47366536-47365672)
	4-721, gnl\|Mm7\|chr4 (114466464-114467104)