Non-Coding RNA Search

Ova1-OVRM10058D02

Sequence:


               
               TGTGGCAAAGGCGAAAGTGACTTCTGAGCTCTTTCTGCGTGGCTGTGGGGCTGTGATTAT
CCAGATCTGGTGGCCCATGTGCCCTCCGTGCCAGGCTGCTACCTCGGCCTCCACAGCGGC
CTTGAACCCCACTCTCCCTCCTGGAAGCCAGCCCTGCTGGCACACAGGGCTGCAGGCAGT
CTTTCCCTTCTTTGTTTCTCTGAAACCATTAGAAGGGCCTCTGGGTTGGGAGTCTGGGTT
GCTAAGAGCTTTCCTCCAGCCAGACCTTATCACTGGCTTGAGAAATCTCCAGACAAAGTT
TTCCCTGGAACTCAGGCTTGGAGGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGGCAAAGGCGAAAGTGACTTCTGAGCTCTTTCTGCGTGGCTGTGGGGCTGTGATTAT
CCAGATCTGGTGGCCCATGTGCCCTCCGTGCCAGGCTGCTACCTCGGCCTCCACAGCGGC
CTTGAACCCCACTCTCCCTCCTGGAAGCCAGCCCTGCTGGCACACAGGGCTGCAGGCAGT
CTTTCCCTTCTTTGTTTCTCTGAAACCATTAGAAGGGCCTCTGGGTTGGGAGTCTGGGTT
GCTAAGAGCTTTCCTCCAGCCAGACCTTATCACTGGCTTGAGAAATCTCCAGACAAAGTT
TTCCCTGGAACTCAGGCTTGGAGGGTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               74-184, - strand, RNAz p=0.917638
               

               
               78-195, - strand, RNAz p=0.827696

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               74-184, - strand, RNAz p=0.917638
               

               
               78-195, - strand, RNAz p=0.827696

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               3-328, gnl|bosTau2|chr10 (10271224-10271554)
               

               
               3-328, gnl|canFam2|chr30 (35572815-35573222)
               

               
               3-328, gnl|hg17|chr15 (66669187-66669582)
               

               
               3-328, gnl|Hg17|chr15 (66669238-66669563)
               

               
               3-328, gnl|mm7|chr9 (62553521-62553176)
               

               
               3-328, gnl|monDom2|scaffold_12 (43330581-43330186)
               

               
               3-328, gnl|oryCun1|scaffold_166246 (9512-9214)
               

               
               3-328, gnl|panTro1|chr16 (67185389-67185784)
               

               
               3-328, gnl|rheMac2|chr7 (47202609-47203004)
               

               
               3-328, gnl|rn3|chr8 (66706796-66706445)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-328, gnl|bosTau2|chr10 (10271224-10271554)
               

               
               3-328, gnl|canFam2|chr30 (35572815-35573222)
               

               
               3-328, gnl|hg17|chr15 (66669187-66669582)
               

               
               3-328, gnl|Hg17|chr15 (66669238-66669563)
               

               
               3-328, gnl|mm7|chr9 (62553521-62553176)
               

               
               3-328, gnl|monDom2|scaffold_12 (43330581-43330186)
               

               
               3-328, gnl|oryCun1|scaffold_166246 (9512-9214)
               

               
               3-328, gnl|panTro1|chr16 (67185389-67185784)
               

               
               3-328, gnl|rheMac2|chr7 (47202609-47203004)
               

               
               3-328, gnl|rn3|chr8 (66706796-66706445)

	74-184, - strand, RNAz p=0.917638
	78-195, - strand, RNAz p=0.827696

	3-328, gnl\|bosTau2\|chr10 (10271224-10271554)
	3-328, gnl\|canFam2\|chr30 (35572815-35573222)
	3-328, gnl\|hg17\|chr15 (66669187-66669582)
	3-328, gnl\|Hg17\|chr15 (66669238-66669563)
	3-328, gnl\|mm7\|chr9 (62553521-62553176)
	3-328, gnl\|monDom2\|scaffold_12 (43330581-43330186)
	3-328, gnl\|oryCun1\|scaffold_166246 (9512-9214)
	3-328, gnl\|panTro1\|chr16 (67185389-67185784)
	3-328, gnl\|rheMac2\|chr7 (47202609-47203004)
	3-328, gnl\|rn3\|chr8 (66706796-66706445)